popgenmethods / lecture_notesLinks
Lecture Notes on Computational and Mathematical Population Genetics
☆191Updated 4 years ago
Alternatives and similar repositories for lecture_notes
Users that are interested in lecture_notes are comparing it to the libraries listed below
Sorting:
- Visualize and annotate genomic coverage with ggplot2☆259Updated 4 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 3 weeks ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆315Updated this week
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆202Updated 10 months ago
- Differential analysis of RNA-Seq☆304Updated last week
- Ultrafast GPU-enabled QTL mapper☆180Updated 2 months ago
- ☆174Updated 4 years ago
- A library of standard population genetic models☆133Updated last week
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆166Updated 2 years ago
- ☆70Updated 3 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 6 months ago
- Tools to work with variant call format files☆259Updated 3 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated last year
- Download FASTQ files from SRA or ENA repositories.☆331Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆241Updated 2 years ago
- Short lessons from FAS Informatics coffee hour☆151Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- R package for DNA methylation analysis☆231Updated 3 months ago
- resources for faculty☆217Updated 2 years ago
- A grammar of graphics for comparative genomics☆680Updated 4 months ago
- Genomic Data Retrieval with R☆222Updated 4 months ago
- Low Coverage Calling of Genotypes☆152Updated 3 months ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month
- RNA-seq workflow using STAR and DESeq2☆341Updated 10 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- Web application to explore the Sequence Read Archive.☆218Updated 2 months ago