GATB / gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
☆63Updated last month
Alternatives and similar repositories for gatb-core:
Users that are interested in gatb-core are comparing it to the libraries listed below
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 3 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago
- k-mer counting software☆39Updated 3 years ago
- Adaptive semi-global banded alignment on string graphs☆65Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆86Updated 3 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆47Updated 4 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆71Updated 4 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆103Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 4 years ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 6 years ago
- De novo genome assembly and multisample variant calling☆112Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆66Updated 4 months ago
- Pan-Genomic Matching Statistics☆50Updated 11 months ago
- Genome inference from a population reference graph☆95Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Assembled Genomes Compressor☆159Updated 3 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 9 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- ☆64Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated 2 weeks ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago