praneet1988 / ELeFHAntLinks
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
☆23Updated 3 years ago
Alternatives and similar repositories for ELeFHAnt
Users that are interested in ELeFHAnt are comparing it to the libraries listed below
Sorting:
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- ☆56Updated 5 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- ☆22Updated 3 years ago
- ☆19Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆62Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- ☆48Updated 7 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- ☆22Updated 3 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- ☆45Updated 2 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆66Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- A single-cell RNA-seq pipeline☆26Updated 2 years ago
- From geospatial to spatial -omics☆100Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago