praneet1988 / ELeFHAntView external linksLinks
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
☆23Jul 18, 2022Updated 3 years ago
Alternatives and similar repositories for ELeFHAnt
Users that are interested in ELeFHAnt are comparing it to the libraries listed below
Sorting:
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 weeks ago
- Human brain, >200,000 nuclei☆23Jun 17, 2021Updated 4 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 9 months ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- ☆13Mar 20, 2021Updated 4 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Develop custom oligo design pipelines.☆26Updated this week
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆36Apr 5, 2023Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- ☆16Sep 13, 2024Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Jan 27, 2026Updated 2 weeks ago
- Killer tools/packages/libraries/websits/...☆20Feb 6, 2026Updated last week
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated last year
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated last week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 2 months ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Source code for integrative nonnegative matrix factorization☆19Jul 12, 2018Updated 7 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆63Feb 4, 2026Updated last week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Dec 4, 2025Updated 2 months ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Jan 30, 2026Updated 2 weeks ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆131Nov 17, 2023Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Single cell proteomics data processing☆30Oct 14, 2025Updated 4 months ago
- ☆22May 6, 2022Updated 3 years ago
- Spatial One☆30Oct 31, 2024Updated last year
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year