praneet1988 / ELeFHAntLinks
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
☆23Updated 3 years ago
Alternatives and similar repositories for ELeFHAnt
Users that are interested in ELeFHAnt are comparing it to the libraries listed below
Sorting:
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- ☆55Updated 4 years ago
- ☆48Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆65Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆19Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 2 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- ☆53Updated 2 years ago
- ☆44Updated 5 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- ☆61Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Updated 5 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 6 months ago
- ☆43Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago