SlavovLab / SCoPE2Links
☆18Updated 3 months ago
Alternatives and similar repositories for SCoPE2
Users that are interested in SCoPE2 are comparing it to the libraries listed below
Sorting:
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- An R package for visualising cell-cell interactions☆44Updated 11 months ago
- ☆19Updated 3 months ago
- ☆24Updated 2 months ago
- R package for Bioconductor submission☆35Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 9 months ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated last year
- ☆12Updated last year
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Gene Expression Decomposition and Integration☆18Updated 5 months ago
- ☆36Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Analysis and visualization of RNA-Seq results☆29Updated 2 months ago
- ☆23Updated 3 years ago
- ☆10Updated 6 months ago
- Pseudotime Analysis for Bulk Data☆16Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last week
- deconvolution for RNAseq and bisulfite sequencing☆10Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 2 months ago
- ☆25Updated 2 months ago
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆13Updated last year