AC-PCA: simultaneously performs dimension reduction and adjustment for confounding variation
☆14Sep 26, 2020Updated 5 years ago
Alternatives and similar repositories for AC-PCA
Users that are interested in AC-PCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- ☆14Aug 30, 2025Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆27Feb 5, 2019Updated 7 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Jan 17, 2019Updated 7 years ago
- Estimate genetic correlation using predicted expression☆28Mar 8, 2018Updated 8 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 5 months ago
- allowing R users to work with dlib through Rcpp☆13Apr 11, 2018Updated 8 years ago
- ☆12Feb 16, 2025Updated last year
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆35May 20, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Perform inference on algorithm-agnostic variable importance in Python☆21May 12, 2022Updated 4 years ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 7 months ago
- Exact Hamiltonian Monte Carlo Sampler for Truncated Multivariate Gaussians☆12Feb 11, 2020Updated 6 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- SKATE R Utilities☆10Mar 7, 2026Updated 6 months ago
- stageR package☆13May 8, 2026Updated 4 months ago
- A package for reading ABF (binary format used by Axon pCLAMP)☆10Jul 21, 2020Updated 6 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Example data for R/qtl2☆13May 29, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Jul 22, 2026Updated 2 months ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 6 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆37Mar 12, 2025Updated last year
- logistic factor analysis☆16Jan 29, 2026Updated 7 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated last month
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 6 months ago
- Integrative orthogonal non-negative matrix factorization☆32Sep 29, 2019Updated 6 years ago