linzx06 / AC-PCALinks
AC-PCA: simultaneously performs dimension reduction and adjustment for confounding variation
☆14Updated 5 years ago
Alternatives and similar repositories for AC-PCA
Users that are interested in AC-PCA are comparing it to the libraries listed below
Sorting:
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- An R package for adaptive sum of powered score test(ASPU) in genetic association studies.☆12Updated 4 years ago
- Bayesian Consensus Clustering, packaged up from code by Eric F. Lock☆19Updated 2 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- ☆21Updated 8 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- ☆16Updated 6 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆45Updated 7 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- Analaysis for the batch correction paper☆10Updated 5 months ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆48Updated 5 years ago
- ☆29Updated 2 years ago
- ☆21Updated last year
- Statistical Inference for Unsupervised Learning☆16Updated 9 months ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago