rongstat / SMAILinks
Alignability testing and integration of single-cell data
☆21Updated last year
Alternatives and similar repositories for SMAI
Users that are interested in SMAI are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Cell type pipes for R☆51Updated last year
- Latent Embedding Multivariate Regression☆92Updated 7 months ago
- ☆47Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆41Updated last month
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆45Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Annotated multivariate observation data in R☆48Updated last month
- Normalize CITEseq Data☆66Updated 3 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆52Updated 2 years ago
- metadata and data from the database☆41Updated 5 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- ☆35Updated 4 months ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 10 months ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- ☆41Updated 4 years ago
- ☆31Updated 4 years ago
- Fast motif matching in R☆47Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago