rongstat / SMAI
Alignability testing and integration of single-cell data
☆21Updated last year
Alternatives and similar repositories for SMAI:
Users that are interested in SMAI are comparing it to the libraries listed below
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- ☆42Updated 4 months ago
- ☆39Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆19Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆36Updated 5 months ago
- ☆47Updated last year
- ☆30Updated 2 months ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- metadata and data from the database☆39Updated 5 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 4 months ago
- ☆37Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Using BCR and expression for sequence embedding☆21Updated 2 weeks ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆50Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Cell type pipes for R☆51Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated last month
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated 3 weeks ago