saketkc / pySCTransformLinks
Python package to perform normalization and variance-stabilization of single-cell data
☆25Updated 6 months ago
Alternatives and similar repositories for pySCTransform
Users that are interested in pySCTransform are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- ☆62Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ☆49Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- A python package for chromVAR☆33Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Pipeline to run scE2G☆32Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- Information-based dimensionality reduction☆29Updated last year
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated this week
- ☆37Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- Single cell omics biology annotations☆53Updated 9 months ago
- pseudobulking on an AnnData object☆34Updated 10 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- ☆37Updated 2 weeks ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 3 months ago