Workflow to reproduce results and figures for the second BeatAML manuscript
☆18Jun 28, 2022Updated 4 years ago
Alternatives and similar repositories for beataml2_manuscript
Users that are interested in beataml2_manuscript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆47Apr 8, 2020Updated 6 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆23Dec 25, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- R package to analyze single cell DNA sequencing data.☆12Oct 14, 2026Updated 2 weeks ago
- Data analysis scripts for scRNA-seq analysis of relapsed and refractory multiple myeloma☆10Sep 27, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 7 years ago
- R implementation of Robust Rank Aggregation algortihm☆12Jun 8, 2022Updated 4 years ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆76Apr 25, 2023Updated 3 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆101Mar 6, 2026Updated 7 months ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆49May 22, 2024Updated 2 years ago
- ☆22Apr 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Run Picard on BAM files and collate 90 metrics into one file.☆40Sep 27, 2017Updated 9 years ago
- Code related to the Celligner manuscript☆49Oct 30, 2020Updated 6 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Survival Support Vector Analysis☆20Apr 4, 2025Updated last year
- ☆12Aug 2, 2020Updated 6 years ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Updated this week
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆30May 5, 2023Updated 3 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- ☆18Apr 17, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- CytoGenetic Pattern Sleuth (CytoGPS) is a software tool to parse semi-structured ISCN-based karyotypes in text formats. This Java-based s…☆11Aug 31, 2021Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆31Apr 16, 2020Updated 6 years ago
- ☆10Jul 16, 2021Updated 5 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- A GTF-native ORF annotation tool for transcriptomes☆15Jun 11, 2026Updated 4 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆76Dec 19, 2022Updated 3 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Oct 5, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆17May 14, 2025Updated last year
- Features Engineering Made Easy☆16Apr 23, 2026Updated 6 months ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆20Feb 22, 2022Updated 4 years ago
- ☆11Mar 5, 2025Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆42Jan 6, 2021Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago