biodev / beataml2_manuscriptLinks
Workflow to reproduce results and figures for the second BeatAML manuscript
☆13Updated 3 years ago
Alternatives and similar repositories for beataml2_manuscript
Users that are interested in beataml2_manuscript are comparing it to the libraries listed below
Sorting:
- Analysis notebooks and data for AML hierarchies paper☆16Updated 2 years ago
- ☆48Updated last year
- Individual level Differential Expression Analysis for Single cells☆25Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Hierarchical classification of cells☆26Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Updated 5 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 6 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆41Updated 7 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 10 months ago
- ☆43Updated 4 years ago
- Cancer Dependency Map package☆30Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- XEnograft Visualization & Analysis☆11Updated last month
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆55Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Tools for assessing clustering robustness☆25Updated 2 weeks ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆37Updated last year