Alternatives and similar repositories for pretzel

Users that are interested in pretzel are comparing it to the libraries listed below

• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆24Updated last year
• guigolab / geneid
  Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences
  ☆18Updated 2 years ago
• wdecoster / phasius
  ☆15Updated 4 months ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• hannesbecher / shiny-k-mers
  Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…
  ☆14Updated last year
• ekg / ACAD18
  Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop
  ☆12Updated 6 years ago
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated last year
• CshlSiepelLab / RPHAST
  RPHAST: Phylogenetic Analysis with Space/Time Models in R
  ☆11Updated 11 months ago
• tgvaughan / MultiTypeTree
  BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.
  ☆21Updated 3 months ago
• grenaud / vgan
  Suite of tools for pangenomics built using vg
  ☆24Updated 4 months ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 4 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 5 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆13Updated 5 years ago
• cboursnell / transfuse
  Merge transcriptome assemblies
  ☆31Updated 9 years ago
• dib-lab / kProcessor
  kProcessor: kmers processing framework.
  ☆10Updated 2 years ago
• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• Oshlack / necklace
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆22Updated 5 years ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated last week
• wurmlab / genevalidator
  GeneValidator: Identify problems with predicted genes
  ☆47Updated last year
• johnomics / tapestry
  Validate and edit small eukaryotic genome assemblies
  ☆32Updated 2 years ago
• stjudecloud / ngsderive
  Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
  ☆12Updated last week
• biosails / pheniqs
  Fast and accurate sequence demultiplexing
  ☆28Updated 5 months ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆22Updated last year
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 5 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 5 months ago
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆18Updated 3 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆34Updated this week
• bcm-uga / SSMPG2017
  Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)
  ☆14Updated 8 years ago