Just Another JAva Package for Sequence Analysis
☆24Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for japsa
Users that are interested in japsa are comparing it to the libraries listed below
Sorting:
- ☆26Oct 31, 2019Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- ☆12Dec 6, 2023Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- Selective and Recursive local Assembler☆15Jan 31, 2022Updated 4 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 3 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- ☆49Nov 7, 2024Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago