yechengxi / Sparc
☆14Updated 6 years ago
Alternatives and similar repositories for Sparc
Users that are interested in Sparc are comparing it to the libraries listed below
Sorting:
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- ☆28Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- A sparse k-mer graph based, memory-efficient genome assembler.☆9Updated 6 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 7 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Assembly Likelihood Estimator☆34Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 8 months ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago