Alternatives and similar repositories for Sparc

Users that are interested in Sparc are comparing it to the libraries listed below

• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆67Updated 5 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 6 years ago
• tanghaibao / quota-alignment
  Guided synteny alignment between duplicated genomes (within specified quota constraint)
  ☆58Updated 8 years ago
• VGP / vgp-tools
  ☆28Updated 6 months ago
• volkansevim / alpha-CENTAURI
  A python package from Pacific Biosciences to analyze centromeric sequences
  ☆21Updated 10 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• isovic / raptor
  Graph-based mapping of long sequences, noisy or HiFi.
  ☆55Updated 5 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆18Updated 9 years ago
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆44Updated 2 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 2 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆29Updated 10 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆22Updated last year
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆29Updated 2 weeks ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆50Updated 6 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆27Updated 2 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• ruanjue / wtdbg
  A fuzzy Bruijn graph approach to long noisy reads assembly
  ☆39Updated 8 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago