yechengxi / SparcLinks
☆14Updated 6 years ago
Alternatives and similar repositories for Sparc
Users that are interested in Sparc are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 months ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- This is the Haplotypo repository☆20Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- tandem repeat finding from erroneous long reads☆15Updated 3 years ago
- A sparse k-mer graph based, memory-efficient genome assembler.☆9Updated 7 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆34Updated 7 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆20Updated 3 years ago
- MIRA sequence assembler☆29Updated 5 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Updated 10 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago