fkallen / CARELinks
CARE: Context-Aware Read Error correction for Illumina reads
☆21Updated 2 years ago
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below
Sorting:
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A more efficient quality control tool for sequencing data☆31Updated 7 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- ☆26Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- GBWT-based handle graph☆31Updated last week
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆28Updated 9 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated 3 weeks ago
- ☆21Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Updated 3 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 9 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year