fkallen / CARELinks
CARE: Context-Aware Read Error correction for Illumina reads
☆20Updated last year
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below
Sorting:
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 3 weeks ago
- A more efficient quality control tool for sequencing data☆31Updated 3 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- ☆26Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ☆66Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- ☆16Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Convert HAL to VG☆22Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 10 months ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated last week