fkallen / CARE
CARE: Context-Aware Read Error correction for Illumina reads
☆19Updated 10 months ago
Related projects: ⓘ
- Parallel Sequence to Graph Alignment☆34Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆15Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated 9 months ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆43Updated 3 weeks ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated 3 months ago
- ☆28Updated last year
- Lift-over alignments from variant-aware references☆34Updated last year
- Pan-Genomic Matching Statistics☆45Updated 5 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 3 months ago
- Bidirectional WFA (Paper)☆40Updated 4 months ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 7 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆22Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated last month
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆25Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆39Updated last month
- ☆13Updated last year
- ☆64Updated 5 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 3 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 3 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆11Updated last year
- ☆17Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆27Updated 8 months ago
- MONI: A Pangenomic Index for Finding MEMs☆35Updated this week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago