CARE: Context-Aware Read Error correction for Illumina reads
☆21Nov 1, 2023Updated 2 years ago
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆46Dec 10, 2025Updated 8 months ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆21Jul 2, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- genome sequence alignment☆14Oct 9, 2019Updated 6 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 3 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- The Power of LaTeX, the Style of Markdown.☆12Sep 5, 2024Updated last year
- K-mer substring space decomposition☆44May 27, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Apr 26, 2022Updated 4 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆27Aug 31, 2022Updated 4 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 4 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Front-Detection Neural Network minimal Code☆11Jan 30, 2023Updated 3 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 5 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Aug 3, 2026Updated 3 weeks ago
- Very large scale k-mer counting and analysis on Apache Spark.☆19Jul 9, 2026Updated last month
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 3 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Jan 15, 2025Updated last year
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆65Jan 22, 2026Updated 7 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 3 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago