STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data
☆13Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for STREAM2
Users that are interested in STREAM2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆12May 19, 2019Updated 7 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Nov 11, 2021Updated 4 years ago
- Matplotlib tips and examples☆11Jun 9, 2020Updated 6 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Jan 1, 2022Updated 4 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆33Jun 24, 2024Updated 2 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 3 years ago
- Simple KV storage with Raft consensus algorithm inside☆21Nov 21, 2022Updated 3 years ago
- ☆14May 26, 2020Updated 6 years ago
- Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation☆28Feb 3, 2021Updated 5 years ago
- ☆25Aug 5, 2025Updated last year
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 6 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- Pipelines and tools for MRI analysis☆12Jun 14, 2023Updated 3 years ago
- an organelle emulator written in pygame + puredata☆13Aug 31, 2021Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Dec 6, 2022Updated 3 years ago
- A MatLab framework to facilitate the analysis of bipartite complex networks☆10Jul 12, 2015Updated 11 years ago
- 一个用go语言实现的基于Raft一致性协议的KV数据库☆26Apr 22, 2021Updated 5 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Emap2sec is a computational tool to identify protein secondary structures☆16Jul 31, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆70Jul 8, 2025Updated last year
- nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.☆16Aug 14, 2026Updated 2 weeks ago
- Symbol Representing Hardware And Software Processing Of Sensor Input☆16Aug 2, 2016Updated 10 years ago
- Evolutionary Transcriptomics with R☆47Aug 24, 2026Updated last week
- Pipeline for processing inDrops sequencing data☆75Oct 26, 2018Updated 7 years ago
- ☆10Feb 27, 2026Updated 6 months ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago