wtsi-hpag / scaffHiC
Pipeline for genome scaffolding by modelling distributions of HiC pairs
☆10Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scaffHiC
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆11Updated 2 months ago
- Set of script for the paper on the cattle graph genome☆13Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 8 months ago
- parallelLastz: Running Lastz in parallel☆15Updated 2 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- SINE annotation tool for plant genomes☆18Updated 10 months ago
- Simple tools for working with Hi-C data☆16Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Updated 11 months ago
- a fork of the gap-closing pipeline PBJelly☆13Updated 5 years ago
- ☆15Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- plot genome alignment synteny☆19Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆12Updated 7 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 7 months ago
- ☆14Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- Genome alignment and synteny plots☆27Updated last year
- Construct and Analyze the North American Vitis pangenome☆21Updated 11 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆11Updated last year
- Dynamic Elongation of a Genome Assembly Path☆15Updated 6 months ago
- ☆12Updated 5 months ago
- The MafFilter genome alignment processor☆17Updated 2 months ago
- Long Read Based SV Calling Tools Analysis☆11Updated 7 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Updated last year