wtsi-hpag / scaffHiCLinks
Pipeline for genome scaffolding by modelling distributions of HiC pairs
☆9Updated 2 years ago
Alternatives and similar repositories for scaffHiC
Users that are interested in scaffHiC are comparing it to the libraries listed below
Sorting:
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated last month
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated this week
- Identification of conserved non-coding sequences in plants☆20Updated last month
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆11Updated last month
- ☆15Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 months ago
- ☆15Updated 4 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆9Updated 2 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- defusion☆14Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- ☆12Updated 4 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated last month