bcgsc / NanoSimLinks
Nanopore sequence read simulator
☆287Updated this week
Alternatives and similar repositories for NanoSim
Users that are interested in NanoSim are comparing it to the libraries listed below
Sorting:
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Long read based human genomic structural variation detection with cuteSV☆277Updated 4 months ago
- Long read / genome alignment software☆310Updated last month
- a long read simulator that can imitate many types of read problems☆265Updated last year
- Filtering and trimming of long read sequencing data☆213Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆326Updated 4 months ago
- Structural variant toolkit for VCFs☆397Updated 2 weeks ago
- Read-based phasing of genomic variants, also called haplotype assembly☆402Updated last month
- An overview of all nanopack tools☆278Updated 2 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205Updated 2 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆219Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- A bioinformatics tool for working with modified bases☆244Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆256Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆173Updated 2 years ago
- k-mer based assembly evaluation☆334Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 10 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆238Updated last month
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- De-Novo Repeat Discovery Tool☆229Updated 6 months ago
- Fast genome analysis from unassembled short reads☆308Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆234Updated 2 years ago
- ☆231Updated this week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- Jasmine: SV Merging Across Samples☆237Updated last year