Alternatives and similar repositories for equilibrator

Users that are interested in equilibrator are comparing it to the libraries listed below

• latendre / PythonCyc
  ☆22Updated 4 years ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 3 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 9 months ago
• jensenlab / gapsplit
  Efficient random sampling for COBRA models
  ☆13Updated 3 years ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated 4 months ago
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆12Updated 2 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆45Updated 5 years ago
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated last month
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆61Updated 4 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆72Updated last month
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆54Updated 3 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 4 months ago
• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆13Updated 2 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 3 months ago
• AlmaasLab / BiGMeC
  BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
  ☆15Updated 2 years ago
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 9 months ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆16Updated 9 years ago
• leilahsn / FastKnock
  ☆9Updated last year
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆24Updated 2 years ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆14Updated 3 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆22Updated last month
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated 3 weeks ago