PacificBiosciences / kineticsToolsLinks
Tools for detecting DNA modifications from single molecule, real-time sequencing data
☆26Updated 3 years ago
Alternatives and similar repositories for kineticsTools
Users that are interested in kineticsTools are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 2 months ago
- ☆66Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- ☆29Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- A program for detection of tRNA genes☆69Updated 2 years ago
- ☆31Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- orthology assignment using phylogenetic and network analyses☆47Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- ☆35Updated 2 years ago