PacificBiosciences / kineticsToolsLinks
Tools for detecting DNA modifications from single molecule, real-time sequencing data
☆25Updated 3 years ago
Alternatives and similar repositories for kineticsTools
Users that are interested in kineticsTools are comparing it to the libraries listed below
Sorting:
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- new repo☆28Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- TGS scaffolding☆46Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆28Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆62Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated 6 months ago
- PacBio BAM toolkit☆43Updated 4 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- ☆32Updated 4 years ago
- ☆25Updated 9 years ago