marbl / MHAPLinks
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
☆98Updated 3 years ago
Alternatives and similar repositories for MHAP
Users that are interested in MHAP are comparing it to the libraries listed below
Sorting:
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Genome inference from a population reference graph☆96Updated 7 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- Fast and accurate genomic distances using HyperLogLog☆162Updated 2 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 2 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- ☆118Updated last month
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- alignment to variation graph inducer☆150Updated 2 weeks ago
- A fast K-mer counter for high-fidelity shotgun datasets☆134Updated 2 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Long read aligner☆115Updated 2 years ago
- Find all significant local alignments between reads☆141Updated last year
- Chromosome-level scaffolding using multiple references☆163Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆70Updated last week
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 7 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago