marbl / MHAPLinks
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
☆98Updated 3 years ago
Alternatives and similar repositories for MHAP
Users that are interested in MHAP are comparing it to the libraries listed below
Sorting:
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Genome inference from a population reference graph☆96Updated 8 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Find all significant local alignments between reads☆141Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆135Updated 3 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- scripts to parse IrysView output☆39Updated 10 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- ☆101Updated last year
- alignment to variation graph inducer☆152Updated this week
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- ☆118Updated 2 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Very fast ONT basecaller☆52Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago