marbl / MHAPLinks
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
☆99Updated 3 years ago
Alternatives and similar repositories for MHAP
Users that are interested in MHAP are comparing it to the libraries listed below
Sorting:
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- Genome inference from a population reference graph☆96Updated 9 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 10 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Fast and accurate genomic distances using HyperLogLog☆163Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- Very fast ONT basecaller☆52Updated 3 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Find all significant local alignments between reads☆141Updated last year
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆137Updated 3 months ago