MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
☆98Jun 27, 2022Updated 4 years ago
Alternatives and similar repositories for MHAP
Users that are interested in MHAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Find all significant local alignments between reads☆140Jul 3, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆702Jun 18, 2026Updated last month
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆150Jun 23, 2026Updated 3 weeks ago
- This is an updated mirror of the original PacBio Read Simulator☆40Mar 30, 2018Updated 8 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- shell tools for processing phylogenetic trees☆120Aug 30, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast multi-threaded k-mer counter☆547Mar 20, 2024Updated 2 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆174Jun 3, 2026Updated last month
- MUMmer for HPC☆18Jan 7, 2013Updated 13 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Sep 20, 2017Updated 8 years ago
- ☆28Updated this week
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated 2 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago