marbl / MHAP
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
☆96Updated 2 years ago
Related projects: ⓘ
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 4 years ago
- Genome inference from a population reference graph☆92Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆80Updated 6 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆91Updated 5 months ago
- A tool for Racon polishing of miniasm assemblies☆72Updated 3 years ago
- Interactive visualization of assembly graphs☆79Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆78Updated 7 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆66Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆76Updated 5 months ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- ☆45Updated this week
- Estimating k-mer coverage histogram of genomics data☆76Updated 9 months ago
- Comparison of multiple long read datasets☆103Updated 3 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆111Updated 4 months ago
- SV caller for nanopore data☆89Updated 4 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 2 years ago
- Yet another k-mer analyzer☆112Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆58Updated 3 years ago
- Find all significant local alignments between reads☆139Updated 2 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆101Updated 2 years ago
- ☆81Updated 5 years ago
- A tool for somatic structural variant calling using long reads☆99Updated this week
- ☆119Updated this week
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆101Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆85Updated 3 years ago
- Graph realignment tools for structural variants☆150Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆94Updated last year