Specifications for PacBio® native file formats
☆31Nov 19, 2024Updated last year
Alternatives and similar repositories for PacBioFileFormats
Users that are interested in PacBioFileFormats are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- Collection of tools for the analysis of CpG data☆108Jul 9, 2025Updated 7 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- ☆10Jul 15, 2016Updated 9 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- ☆10Mar 4, 2025Updated 11 months ago
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- A minimap2 frontend for PacBio native data formats☆210Jan 26, 2026Updated last month
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Apr 21, 2021Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Feb 24, 2022Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- ☆27Dec 22, 2025Updated 2 months ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Sep 11, 2020Updated 5 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Sep 10, 2014Updated 11 years ago
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 13 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated 2 weeks ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Aug 21, 2024Updated last year
- Multithreaded read analysis☆23Feb 19, 2026Updated last week
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Jul 2, 2023Updated 2 years ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- Assembly by Reduced Complexity (ARC)☆42Mar 29, 2016Updated 9 years ago