Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!
☆47Mar 13, 2026Updated 2 months ago
Alternatives and similar repositories for pymmseqs
Users that are interested in pymmseqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆21May 15, 2025Updated last year
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last week
- ☆41Jul 28, 2025Updated 9 months ago
- The data and standalone program of ESM-DBP☆10Jun 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆47Jul 11, 2025Updated 10 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆79Jan 27, 2026Updated 4 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆55Updated this week
- ☆18Dec 5, 2025Updated 5 months ago
- Controllable Protein Sequence Generation with LLM Preference Optimization, AAAI 2025☆16Mar 10, 2025Updated last year
- ☆16Mar 28, 2025Updated last year
- ☆37Nov 23, 2025Updated 6 months ago
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆21Nov 24, 2025Updated 6 months ago
- ParaAntiProt: Paratope Prediction Using Antibody and Protein Language Models☆10Jul 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Jul 18, 2024Updated last year
- Modelling protein conformational landscape with Alphafold☆59Aug 29, 2025Updated 8 months ago
- One protein is all you need (ICLR 2026)☆109Apr 22, 2026Updated last month
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 9 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆90Jul 10, 2025Updated 10 months ago
- ☆43Jun 12, 2025Updated 11 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆56Jun 19, 2025Updated 11 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆90Dec 3, 2025Updated 5 months ago
- Efficient implementatin of ESM family.☆85Sep 9, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆53Apr 23, 2026Updated last month
- ☆26Feb 4, 2025Updated last year
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆106Updated this week
- ☆23Apr 8, 2026Updated last month
- Public Release of ProGen3 family of Models☆109Jul 21, 2025Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆62Mar 23, 2026Updated 2 months ago
- ☆13Updated this week
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆28Aug 8, 2025Updated 9 months ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 3 weeks ago
- ProtSpace is program that helps in visualizing and investigating our protein embedding space.☆50May 2, 2026Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- ☆40Mar 30, 2025Updated last year
- our in-house version of ProteinMPNN☆40Feb 12, 2026Updated 3 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆128Oct 24, 2025Updated 7 months ago