Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!
☆47Jun 25, 2026Updated last month
Alternatives and similar repositories for pymmseqs
Users that are interested in pymmseqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ⚠️ Moved to github.com/tsenoner/protspace — this repo is archived (Python package now lives under apps/protspace/ in the monorepo).☆51Jul 14, 2026Updated last week
- ☆33Dec 6, 2025Updated 7 months ago
- ☆164Updated this week
- Biological prediction models made simple.☆52Updated this week
- ☆15Mar 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆37Jul 15, 2026Updated last week
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆20Jun 11, 2025Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆40Mar 30, 2025Updated last year
- The data and standalone program of ESM-DBP☆10Jun 25, 2024Updated 2 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆41Updated this week
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 10 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆205Jul 10, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆48Jul 11, 2025Updated last year
- ☆20Nov 21, 2025Updated 8 months ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆27Apr 29, 2025Updated last year
- Structure based DTI prediction using FSQ discretization☆17Apr 19, 2026Updated 3 months ago
- [NeurIPS 25 Spotlight] Protein Design with Dynamic Protein Vocabulary☆21Nov 23, 2025Updated 8 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 3 months ago
- ☆18Dec 5, 2025Updated 7 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A standardized protein design benchmark for motif-scaffolding problems☆84Jul 18, 2026Updated last week
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆56Jun 19, 2025Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆86Sep 11, 2025Updated 10 months ago
- Analysis of alphafold and colabfold results☆49May 22, 2026Updated 2 months ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆21May 15, 2025Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Feb 25, 2023Updated 3 years ago
- Structure-based fragment identification in latent space☆31Mar 4, 2026Updated 4 months ago
- Efficient implementatin of ESM family.☆85Sep 9, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of IDOLpro: Guided Multi-objective Generative AI to Enhance Structure-based Drug Design.☆15Jun 4, 2025Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- One protein is all you need (ICLR 2026)☆114Apr 22, 2026Updated 3 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated 11 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆61Nov 5, 2025Updated 8 months ago
- ☆42Jul 28, 2025Updated 11 months ago