Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!
☆46Feb 23, 2026Updated last week
Alternatives and similar repositories for pymmseqs
Users that are interested in pymmseqs are comparing it to the libraries listed below
Sorting:
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆19May 15, 2025Updated 9 months ago
- ☆40Jul 28, 2025Updated 7 months ago
- Machine learning prediction of enzyme optimum pH☆24Apr 29, 2025Updated 10 months ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆43Jul 11, 2025Updated 7 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆75Jan 27, 2026Updated last month
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆50Updated this week
- Controllable Protein Sequence Generation with LLM Preference Optimization, AAAI 2025☆16Mar 10, 2025Updated 11 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- ☆15Mar 28, 2025Updated 11 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated 11 months ago
- ☆30Nov 23, 2025Updated 3 months ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Feb 13, 2026Updated 3 weeks ago
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆20Nov 24, 2025Updated 3 months ago
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 2 years ago
- ☆39Jun 12, 2025Updated 8 months ago
- ☆17Dec 5, 2025Updated 3 months ago
- ☆27Aug 8, 2025Updated 6 months ago
- One protein is all you need (ICLR 2026)☆74Feb 19, 2026Updated 2 weeks ago
- Efficient implementatin of ESM family.☆80Sep 9, 2025Updated 5 months ago
- ☆25Feb 4, 2025Updated last year
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- ☆22Nov 26, 2025Updated 3 months ago
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 7 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆102Feb 27, 2026Updated last week
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 6 months ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆54Jun 19, 2025Updated 8 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆83Jul 10, 2025Updated 7 months ago
- Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023☆25Mar 23, 2023Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆84Dec 3, 2025Updated 3 months ago
- benchmarking AI-powered docking methods from the perspective of virtual screening☆32Dec 26, 2024Updated last year
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆63Aug 26, 2025Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- ☆22Nov 6, 2024Updated last year
- ☆40Jan 21, 2026Updated last month
- Alphafold3 using mmseqs2-gpu for sequence query☆37Feb 9, 2026Updated 3 weeks ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- Official repository of GENzyme☆62Nov 29, 2024Updated last year
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago