gersteinlab / BC-DesignLinks
BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.620755v2
☆19Updated 2 months ago
Alternatives and similar repositories for BC-Design
Users that are interested in BC-Design are comparing it to the libraries listed below
Sorting:
- Reaction-Conditioned Virtual Screening of Enzymes☆39Updated 4 months ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆39Updated 3 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated 11 months ago
- Codes for our paper "UniMoMo: Unified Generative Modeling of 3D Molecules for De Novo Binder Design" (ICML 2025)☆62Updated last month
- ☆94Updated last year
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆17Updated 5 months ago
- Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023☆24Updated 2 years ago
- The first large protein language model trained follows structure instructions.☆87Updated 5 months ago
- ☆33Updated 7 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆65Updated 2 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- ☆76Updated 8 months ago
- Code for humanization of antibody and nanobody☆63Updated 2 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆124Updated 4 months ago
- Official code for "Integration of pre-trained protein language models into geometric deep learning networks"☆23Updated 4 months ago
- Official repository of EnzymeFlow☆95Updated 11 months ago
- ☆22Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆111Updated 2 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆120Updated 8 months ago
- ☆35Updated 2 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- ☆26Updated last year
- Public Release of ProGen3 family of Models☆83Updated 3 months ago
- ☆38Updated 4 months ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆99Updated 2 months ago
- ☆48Updated 5 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- ☆107Updated 2 years ago