Alternatives and similar repositories for Alphafold3_tools

Users that are interested in Alphafold3_tools are comparing it to the libraries listed below

• bunzela / AIzymes
  ☆61Updated last month
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆62Updated 10 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆72Updated 2 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• Niopek-Lab / ProDomino
  ☆22Updated 11 months ago
• regeneron-mpds / propermab
  ☆40Updated 8 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆60Updated 2 weeks ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆171Updated 8 months ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 3 weeks ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆135Updated 3 years ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 9 months ago
• Jfeldman34 / AF3Complex
  ☆51Updated 5 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆106Updated 2 weeks ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆228Updated 4 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• guyujun / FunclibLocal
  Rosetta Funclib
  ☆24Updated 5 years ago
• RSCJacksonLab / local-ancestral-sequence-embeddings
  This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".
  ☆11Updated 8 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 4 months ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 11 months ago
• sokrypton / af2bind
  ☆52Updated 3 weeks ago
• ikalvet / heme_binder_diffusion
  ☆143Updated 5 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆85Updated last week
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated last month
• Alex-Abrudan / DynamicMPNN
  ☆39Updated 4 months ago
• Kuhlman-Lab / evopro
  ☆92Updated 2 months ago
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆57Updated 4 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆64Updated 8 months ago
• ai4protein / Pro-Prime
  ☆75Updated 3 months ago