☆26Feb 4, 2025Updated last year
Alternatives and similar repositories for Alphafold3_tools
Users that are interested in Alphafold3_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Apr 23, 2026Updated 2 months ago
- Protein solubility prediction tools☆24Dec 13, 2024Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆24Oct 31, 2025Updated 8 months ago
- This is a python script that allows for batch processing of AlphaFold3 output files☆17Oct 13, 2024Updated last year
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆56Mar 12, 2026Updated 3 months ago
- Toolkit for alphafold3 input and output files☆103Jun 15, 2026Updated 3 weeks ago
- ☆30Aug 8, 2025Updated 10 months ago
- ☆23May 24, 2024Updated 2 years ago
- A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature☆93May 9, 2026Updated last month
- ☆33Mar 2, 2026Updated 4 months ago
- Official repository for the ProteinDJ protein design pipeline☆123Updated this week
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- ☆24Jan 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- A Molecular Video-derived Foundation Model for Scientific Drug Discovery (Nature Communications 2024)☆25Dec 24, 2024Updated last year
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆249Jan 3, 2026Updated 6 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆55Jun 24, 2026Updated last week
- Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!☆47Jun 25, 2026Updated last week
- Dockerized Version of the DiffDock model from MIT☆13May 22, 2023Updated 3 years ago
- Physico-chemical and biological property prediction for small molecules☆12May 3, 2022Updated 4 years ago
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆31May 10, 2025Updated last year
- A command-line interface and Python library for generating AlphaFold3 input files.☆41Jan 2, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Ready-To-Use Pymol Plugin for Docking and Minimization☆12Nov 15, 2025Updated 7 months ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆18Sep 10, 2024Updated last year
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆13Jun 22, 2023Updated 3 years ago
- ☆54Apr 1, 2025Updated last year
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆37Oct 20, 2025Updated 8 months ago
- A tool to compare two CSV files of SMILES strings, find overlapping compounds by InChIKey prefix, and generate an HTML visualization of …☆16Apr 20, 2025Updated last year
- ☆10Oct 31, 2025Updated 8 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆47Dec 16, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- protein folding app running on modal☆39May 30, 2026Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- ☆24Dec 4, 2025Updated 7 months ago
- ☆17Jul 28, 2022Updated 3 years ago
- Materials for 0.5-day MDAnalysis workshops☆14Jul 25, 2025Updated 11 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆80Jun 27, 2026Updated last week
- ☆13May 18, 2025Updated last year