ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
☆88Dec 3, 2025Updated 4 months ago
Alternatives and similar repositories for riff_diff_protflow
Users that are interested in riff_diff_protflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆27Mar 8, 2025Updated last year
- A deep learning-based predictor of enzyme optimal pH☆8Jun 25, 2025Updated 10 months ago
- ☆97Oct 14, 2025Updated 6 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Machine learning prediction of enzyme optimum pH☆54Apr 29, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆51Mar 25, 2026Updated last month
- ☆76Apr 24, 2026Updated last week
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29Mar 30, 2026Updated last month
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆35Oct 17, 2025Updated 6 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆125Oct 24, 2025Updated 6 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆130Feb 1, 2026Updated 3 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆242Nov 5, 2025Updated 5 months ago
- Inference code for RFdiffusion2☆416Apr 3, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆75Mar 23, 2026Updated last month
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆32May 16, 2025Updated 11 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆138Apr 23, 2026Updated last week
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆21Nov 24, 2025Updated 5 months ago
- Deep learning tools for peptide substrate prediction and generation☆43Nov 20, 2025Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆104Apr 15, 2026Updated 2 weeks ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆80Mar 7, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Energy-guided binder design pipeline built on BindCraft☆17Jun 6, 2025Updated 10 months ago
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆80Jan 27, 2026Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- ☆567Feb 6, 2025Updated last year
- ☆74Feb 13, 2026Updated 2 months ago
- ☆47Sep 16, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- ☆247Feb 12, 2026Updated 2 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆25Mar 22, 2026Updated last month
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆106Updated this week
- Design data and process for the AdaptyvBio protein design competition☆11Dec 11, 2024Updated last year
- ☆79Aug 26, 2025Updated 8 months ago
- ☆21Oct 31, 2024Updated last year