ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
☆85Dec 3, 2025Updated 3 months ago
Alternatives and similar repositories for riff_diff_protflow
Users that are interested in riff_diff_protflow are comparing it to the libraries listed below
Sorting:
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Mar 8, 2025Updated last year
- ☆96Oct 14, 2025Updated 5 months ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆35Oct 17, 2025Updated 5 months ago
- Machine learning prediction of enzyme optimum pH☆50Apr 29, 2025Updated 10 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- ☆76Jun 4, 2025Updated 9 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆27Mar 7, 2026Updated 2 weeks ago
- Structure prediction and design of proteins with noncanonical amino acids☆121Feb 1, 2026Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆121Oct 24, 2025Updated 4 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆232Nov 5, 2025Updated 4 months ago
- Inference code for RFdiffusion2☆400Nov 11, 2025Updated 4 months ago
- ☆68Oct 23, 2025Updated 4 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆72Mar 7, 2026Updated 2 weeks ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆28May 16, 2025Updated 10 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated 3 weeks ago
- Deep learning tools for peptide substrate prediction and generation☆41Nov 20, 2025Updated 4 months ago
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆20Nov 24, 2025Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆99Dec 10, 2025Updated 3 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 4 months ago
- Energy-guided binder design pipeline built on BindCraft☆17Jun 6, 2025Updated 9 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆24Mar 11, 2026Updated last week
- Active Learning-Assisted Directed Evolution for Protein Engineering☆81Oct 24, 2025Updated 4 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated 10 months ago
- ☆557Feb 6, 2025Updated last year
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆103Mar 13, 2026Updated last week
- ☆74Feb 13, 2026Updated last month
- ☆47Sep 16, 2024Updated last year
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- ☆242Feb 12, 2026Updated last month
- Design data and process for the AdaptyvBio protein design competition☆10Dec 11, 2024Updated last year
- ☆78Aug 26, 2025Updated 6 months ago
- ☆21Oct 31, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago