Alternatives and similar repositories for DiffSDS

Users that are interested in DiffSDS are comparing it to the libraries listed below

• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated last year
• A4Bio / FoldToken_open
  ☆21Updated 9 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆62Updated 2 months ago
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• zhengkangjie / ESM-AA
  ☆74Updated 6 months ago
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆60Updated 5 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆58Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆65Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 10 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated last year
• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆41Updated 2 years ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆26Updated 2 years ago
• zaixizhang / PocketFlow
  Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"
  ☆15Updated 2 months ago
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated last year
• Graylab / MaskedProteinEnT
  ☆12Updated 8 months ago
• Junjie-Zhu / IDPFold
  IDPFold test version
  ☆21Updated 11 months ago
• lezhang7 / MSAGen
  [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
  ☆32Updated 4 months ago
• bytedance / ConfDiff
  Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
  ☆62Updated 11 months ago
• XintSong / RMSF-net
  ☆13Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆114Updated 5 months ago
• Gonglab-THU / GeoStab
  ☆35Updated 9 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• stau-7001 / S3AI
  ☆13Updated 5 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• bzho3923 / CPDiffusion
  ☆24Updated 10 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆26Updated 11 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago