A4Bio / DiffSDSLinks
Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and Constraints".
☆14Updated 2 years ago
Alternatives and similar repositories for DiffSDS
Users that are interested in DiffSDS are comparing it to the libraries listed below
Sorting:
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- ☆76Updated 9 months ago
- ☆22Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆66Updated 9 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ☆12Updated 11 months ago
- Generative diverse protein backbones by protein language model☆34Updated last month
- ☆15Updated last year
- ☆39Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- ☆28Updated 11 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Updated 3 years ago
- ☆19Updated last week
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆17Updated 6 months ago
- Official repository of ReactZyme☆36Updated last year
- ☆39Updated last year
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Updated last year
- ☆25Updated last year
- ☆34Updated 4 months ago
- ☆17Updated 10 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Code for humanization of antibody and nanobody☆64Updated 3 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆33Updated 8 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago