Alternatives and similar repositories for minifold

Users that are interested in minifold are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆110Updated 3 weeks ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆131Updated 2 weeks ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆59Updated 2 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 6 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆101Updated last month
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆76Updated 2 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆60Updated last month
• levinthal / Pallatom
  ☆100Updated last month
• BIMSBbioinfo / PocketVina
  GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…
  ☆54Updated 2 weeks ago
• BioinfoMachineLearning / FlowDock
  A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)
  ☆95Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• cddlab / boltz_ext
  ☆13Updated 3 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 7 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated 11 months ago
• yehlincho / BoltzDesign1
  ☆171Updated last week
• LPDI-EPFL / DrugFlow
  Multi-domain Distribution Learning for De Novo Drug Design
  ☆99Updated 4 months ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆43Updated 3 weeks ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 7 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆37Updated 2 weeks ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆79Updated this week
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆64Updated last year
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆79Updated last year
• tiejundong / FlexPose
  FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.
  ☆53Updated last year
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆63Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• ELELAB / RosettaDDGPrediction
  ☆70Updated 5 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 3 months ago
• bunzela / AIzymes
  ☆42Updated 2 weeks ago
• baker-laboratory / CA_RFDiffusion
  ☆55Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 8 months ago