MiniFold: Simple, Fast and Accurate Protein Structure Prediction
☆83Jul 10, 2025Updated 7 months ago
Alternatives and similar repositories for minifold
Users that are interested in minifold are comparing it to the libraries listed below
Sorting:
- ☆130Feb 27, 2026Updated last week
- ☆17Dec 5, 2025Updated 3 months ago
- ☆19Nov 21, 2025Updated 3 months ago
- Building Blocks for Equivariant Neural Networks in e3nn and PyTorch 2.0☆18Nov 16, 2025Updated 3 months ago
- Efficient implementatin of ESM family.☆80Sep 9, 2025Updated 5 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 6 months ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆271Sep 23, 2025Updated 5 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- Learning the language of protein-protein interactions☆135Jan 12, 2026Updated last month
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- [ICLR'24] Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for Molecule Generation☆28Feb 24, 2025Updated last year
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆31Dec 8, 2023Updated 2 years ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆102Feb 27, 2026Updated last week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Jan 16, 2026Updated last month
- ☆37Dec 7, 2025Updated 3 months ago
- ☆40Jul 28, 2025Updated 7 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆309Jul 25, 2025Updated 7 months ago
- protein structure generation with sparse all-atom denoising models☆60Feb 25, 2026Updated last week
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 3 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Feb 29, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆190Updated this week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Resources for the BioML Challenge 2024: Bits to Binders☆18Aug 24, 2024Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆148Feb 23, 2026Updated last week
- ☆61Jul 7, 2025Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Feb 7, 2026Updated last month
- Machine learning prediction of enzyme optimum pH☆24Apr 29, 2025Updated 10 months ago
- ☆18Aug 28, 2023Updated 2 years ago
- A high performance drop-in replacement for Biotite's PDBFile.☆41May 27, 2025Updated 9 months ago
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 8 months ago
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated 2 months ago
- SECS is a machine learning framework designed for structure elucidation from spectra such as NMR and IR.☆24Feb 12, 2026Updated 3 weeks ago