Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
☆18Mar 16, 2025Updated last year
Alternatives and similar repositories for Bridge-IF
Users that are interested in Bridge-IF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆47Jul 11, 2025Updated 10 months ago
- ☆23Nov 6, 2024Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆32Mar 22, 2026Updated 2 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆24Mar 20, 2025Updated last year
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆20May 14, 2025Updated last year
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆21May 15, 2025Updated last year
- ☆16Mar 28, 2025Updated last year
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆21Nov 24, 2025Updated 6 months ago
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 2 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated last year
- Complete saturation mutagenesis of a protein using ESM☆18Feb 20, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Apr 1, 2024Updated 2 years ago
- Demos of many Rosetta applications☆25Jun 10, 2025Updated 11 months ago
- ☆32Oct 18, 2024Updated last year
- ☆41Mar 7, 2026Updated 2 months ago
- ☆30Apr 2, 2026Updated last month
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- The Family of Diffusion Protein Language Models (DPLM)☆332Jul 25, 2025Updated 9 months ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆73Updated this week
- ☆33Feb 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Neurally-derived Potts models for protein design, inspired by dTERMen☆14Aug 23, 2022Updated 3 years ago
- ☆138Jun 3, 2025Updated 11 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆128Oct 24, 2025Updated 7 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29May 10, 2026Updated 2 weeks ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Aug 23, 2020Updated 5 years ago
- Efficient manipulation of protein structures in Python☆68Sep 27, 2025Updated 7 months ago
- ☆10Apr 1, 2022Updated 4 years ago
- ☆19Nov 21, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆47Jun 17, 2025Updated 11 months ago
- ☆15Jun 3, 2025Updated 11 months ago
- This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)☆92May 17, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- ☆24Jan 9, 2025Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆184Jun 17, 2023Updated 2 years ago
- Scripts and data deposition for de novo heterodimers manuscript☆11Dec 15, 2018Updated 7 years ago