ajasja / prosculptLinks
Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)
☆27Updated this week
Alternatives and similar repositories for prosculpt
Users that are interested in prosculpt are comparing it to the libraries listed below
Sorting:
- Modelling protein conformational landscape with Alphafold☆51Updated 3 weeks ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- ☆13Updated 4 years ago
- Some scripts that I keep using over and over.☆19Updated last week
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆20Updated last year
- ☆34Updated 2 weeks ago
- A Python framework for the rapid modeling of glycans☆15Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model☆12Updated last week
- Extension of ThermoMPNN for double mutant predictions☆36Updated 2 weeks ago
- ☆22Updated last month
- Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x☆14Updated this week
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆18Updated 4 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆10Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- Structure prediction and design of proteins with noncanonical amino acids☆78Updated last week
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated 2 years ago
- ☆50Updated 3 weeks ago
- ☆14Updated last month
- ☆13Updated 3 months ago
- ☆15Updated 6 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 8 months ago
- ☆13Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- ☆42Updated 2 weeks ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆19Updated 10 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆19Updated 2 years ago
- Explicit crosslinks in AlphaFold 3☆22Updated 4 months ago
- Generative diverse protein backbones by protein language model☆32Updated 7 months ago