Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch
☆49Jul 11, 2025Updated last year
Alternatives and similar repositories for MapDiff
Users that are interested in MapDiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.6…☆23Nov 24, 2025Updated 11 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆90Jul 2, 2025Updated last year
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆21May 15, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆87May 27, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆95Oct 15, 2026Updated 2 weeks ago
- ☆30Aug 16, 2025Updated last year
- ☆43Jul 28, 2025Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- Combining transformer and 3DCNN models to achieve co-design of structures and sequences of antibodies in a diffusional manner☆13Mar 17, 2025Updated last year
- ☆25Sep 25, 2026Updated last month
- ☆15Mar 28, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Making Protein Language Modeling Accessible to All Biologists☆170Oct 22, 2026Updated last week
- Metadiffusion implemented in Boltz-2☆25Feb 23, 2026Updated 8 months ago
- Code for humanization of antibody and nanobody☆99Aug 28, 2025Updated last year
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 4 months ago
- Speedrunning PLM pretraining☆14Sep 22, 2026Updated last month
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆49Aug 5, 2025Updated last year
- [Adv. Sci. 2025] PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization☆15Jul 11, 2025Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- ☆34Feb 5, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆96Jul 31, 2026Updated 2 months ago
- ☆21Nov 21, 2025Updated 11 months ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆18May 4, 2026Updated 5 months ago
- ☆221Sep 24, 2024Updated 2 years ago
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated 2 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆47Mar 22, 2026Updated 7 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Official repository of PXDesign☆272Dec 31, 2025Updated 9 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆235Apr 15, 2025Updated last year
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 3 years ago
- Controllable Protein Sequence Generation with LLM Preference Optimization, AAAI 2025☆18Mar 10, 2025Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆141Oct 30, 2025Updated last year
- ☆145Jun 3, 2025Updated last year
- Official repository of GENzyme☆66Nov 29, 2024Updated last year