Alternatives and similar repositories for SAPP_DMX

Users that are interested in SAPP_DMX are comparing it to the libraries listed below

• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆18Updated 5 months ago
• RosettaCommons / demos
  Demos of many Rosetta applications
  ☆18Updated 2 months ago
• ajasja / prosculpt
  Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)
  ☆35Updated 3 weeks ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• strauchlab / scaffold_design
  ☆17Updated last year
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated 4 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last month
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• meilerlab / probabilities_design
  ☆13Updated 4 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆26Updated last week
• ld139 / ApoDock_public
  Code for ApoDock
  ☆20Updated 4 months ago
• haddocking / HADDOCK-antibody-antigen
  Material to run the HADDOCK antibody-antigen modelling protocol
  ☆22Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• NRGlab / Surfaces
  ☆15Updated 5 months ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 3 years ago
• wells-wood-research / protein-design-archive
  Source code for The Protein Design Archive web application.
  ☆10Updated 3 weeks ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 4 months ago
• KhondamirRustamov / FoldCraft
  ☆36Updated last week
• AspirinCode / GENiPPI
  Interface-aware molecular generative framework for protein-protein interaction modulators
  ☆15Updated 7 months ago
• BrooksResearchGroup-UM / FASTDock
  FASTDock: A Pipeline for Allosteric Drug Discovery - example scripts and jupyter notebook
  ☆18Updated 2 years ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆43Updated 5 months ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• masoudk / AsiteDesign
  ☆13Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• maltesie / bridge2
  GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.
  ☆9Updated 2 years ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆27Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year