Alternatives and similar repositories for EpHod:

Users that are interested in EpHod are comparing it to the libraries listed below

• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last week
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆41Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 8 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆15Updated this week
• CSUBioGroup / DPFunc
  ☆20Updated last month
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆11Updated 5 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆33Updated 2 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆27Updated 6 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• elaspic / elaspic2
  Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…
  ☆19Updated 3 years ago
• SizheQiu / DLTKcat
  Deep learning based prediction of temperature dependent enzyme turnover rates
  ☆13Updated 2 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆14Updated last month
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆35Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated this week
• Furman-Lab / PatchMAN
  ☆24Updated 6 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆17Updated 2 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆27Updated 8 months ago
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated 5 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆21Updated 6 months ago
• Graylab / CAPSIF
  CArbohydrate-Protein Site IdentiFier
  ☆11Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 7 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆26Updated 10 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated last month
• PKUliujl / GeoSeqBuilder
  ☆25Updated last week
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆50Updated 10 months ago