Alternatives and similar repositories for EpHod

Users that are interested in EpHod are comparing it to the libraries listed below

• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆49Updated 8 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 2 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆50Updated 3 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆43Updated 7 months ago
• danny305 / StabilityOracle
  ☆29Updated 3 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆58Updated 3 weeks ago
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 9 months ago
• jtrinquier / SoftAlign
  ☆27Updated 3 weeks ago
• anton-bushuiev / ProteinTTT
  One protein is all you need
  ☆61Updated 3 weeks ago
• jaredsagendorf / pnabind
  A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…
  ☆27Updated 5 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• PapenfussLab / proteindj
  Official repository for the ProteinDJ protein design pipeline
  ☆77Updated this week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆27Updated 4 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆69Updated last year
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆110Updated this week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆76Updated 2 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆66Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 3 months ago
• kiharalab / NuFold
  NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
  ☆47Updated 2 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated 2 months ago
• bene837 / af2seq
  ☆46Updated last year
• SNU-CSSB / RF2-Lite
  ☆32Updated last year
• RP3Net / RP3Net
  ☆13Updated 7 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆112Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last month
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆29Updated 10 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆52Updated 4 months ago