jafetgado / EpHodLinks
Machine learning prediction of enzyme optimum pH
☆21Updated 7 months ago
Alternatives and similar repositories for EpHod
Users that are interested in EpHod are comparing it to the libraries listed below
Sorting:
- Machine learning prediction of enzyme optimum pH☆48Updated 7 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated last month
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago
- ☆54Updated 3 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆74Updated last month
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- ☆71Updated 8 months ago
- One protein is all you need☆57Updated last week
- ☆29Updated 2 months ago
- Kuhlman Lab Installation of AlphaFold3☆37Updated 2 months ago
- ☆27Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆30Updated 10 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆26Updated 3 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆66Updated last year
- ☆31Updated last year
- Efficient manipulation of protein structures in Python☆60Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last week
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆51Updated last week
- ☆46Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆102Updated this week
- ☆39Updated last year
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆51Updated this week
- ☆39Updated 8 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆26Updated 4 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆103Updated last week
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆19Updated 4 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 3 months ago