tplinderoth / ngsParalogLinks
Copy number variation detection using NGS data.
☆15Updated last year
Alternatives and similar repositories for ngsParalog
Users that are interested in ngsParalog are comparing it to the libraries listed below
Sorting:
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- ☆44Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆10Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 9 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆26Updated 6 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 2 months ago
- ☆12Updated 7 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- ☆20Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago