tplinderoth / ngsParalog
Copy number variation detection using NGS data.
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ngsParalog
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- Genetic Map Comparison☆20Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆8Updated last year
- ☆28Updated 2 weeks ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆24Updated 8 months ago
- ☆12Updated 7 months ago
- An R package to detect selection in biological pathways☆14Updated 10 months ago
- Identifying repeats in high-throughput sequencing data☆15Updated 7 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- ☆17Updated 8 years ago
- ☆14Updated 4 years ago
- ☆19Updated 11 months ago
- ☆13Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- ☆18Updated last month