Alternatives and similar repositories for ngsParalog

Users that are interested in ngsParalog are comparing it to the libraries listed below

• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• ANGSD / NgsRelate
  ☆44Updated 7 months ago
• bioinformatics-ptp / detectRUNS
  detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
  ☆10Updated 2 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• winni2k / GLPhase
  A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
  ☆10Updated 4 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆54Updated 4 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆34Updated 2 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last week
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 3 months ago
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆13Updated 2 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 11 months ago
• avaughn271 / AdmixtureBayes
  ☆20Updated last year
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆32Updated 4 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 3 months ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆27Updated 6 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• hannesbecher / shiny-k-mers
  Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…
  ☆14Updated last year
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆45Updated 2 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 4 years ago
• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago