tplinderoth / ngsParalog
Copy number variation detection using NGS data.
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ngsParalog
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆8Updated last year
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- Genetic Map Comparison☆20Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 3 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- ☆18Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆24Updated last week
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- ☆12Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Suite of tools for pangenomics built using vg☆17Updated this week
- Long Read Based SV Calling Tools Analysis☆11Updated 7 months ago
- ☆17Updated 8 years ago
- ☆9Updated 3 years ago
- ☆28Updated this week
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- ☆22Updated 2 weeks ago
- ☆13Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆15Updated 4 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Population Genomics in R workshop☆12Updated 7 months ago
- ☆14Updated 4 years ago