mishaploid / Bo-demographyLinks
Demographic analysis of Brassica oleracea
☆10Updated last month
Alternatives and similar repositories for Bo-demography
Users that are interested in Bo-demography are comparing it to the libraries listed below
Sorting:
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last month
- Useful bioinformatic scripts☆58Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- ☆24Updated 8 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- ☆95Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Haplotype based scans for selection☆137Updated last month
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- NLR-Annotator upload☆75Updated 2 years ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- A program to call variants from genome alignment☆81Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- ☆42Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆86Updated 11 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Updated 3 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- ☆45Updated 9 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- feature-based deep learning for the identification of selective sweeps☆57Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago