Alternatives and similar repositories for mop:

Users that are interested in mop are comparing it to the libraries listed below

• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆20Updated 5 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 6 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated 2 months ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated 3 weeks ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 11 months ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated 9 months ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated last year
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆14Updated 5 months ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆29Updated 6 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆14Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆35Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated last year
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 5 years ago
• shahab-sarmashghi / RESPECT
  Estimating repeat spectra and genome length from low-coverage genome skims
  ☆11Updated last year