RILAB / mopLinks
Simple tool for capturing alignment regions with sufficient quality for genotyping.
☆21Updated 4 years ago
Alternatives and similar repositories for mop
Users that are interested in mop are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆50Updated 6 months ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- ☆53Updated 6 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 2 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- ☆10Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Presentations from the course☆38Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆24Updated 8 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆26Updated 10 months ago