RILAB / mopLinks
Simple tool for capturing alignment regions with sufficient quality for genotyping.
☆21Updated 4 years ago
Alternatives and similar repositories for mop
Users that are interested in mop are comparing it to the libraries listed below
Sorting:
- GONE: Scripts, programs and an example data set☆48Updated last month
- ☆52Updated 2 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 11 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last week
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- info and docs for the Wright Lab☆15Updated 9 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 3 weeks ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- ☆10Updated 5 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆61Updated 10 months ago
- Genetic maps in autopolyploids☆29Updated 3 months ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆15Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆18Updated 2 years ago