Simple tool for capturing alignment regions with sufficient quality for genotyping.
☆23Aug 20, 2021Updated 5 years ago
Alternatives and similar repositories for mop
Users that are interested in mop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 18, 2023Updated 3 years ago
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 5 months ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆33Aug 18, 2026Updated 2 months ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆60Jun 12, 2025Updated last year
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated last year
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆20Mar 31, 2026Updated 6 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆91Jun 14, 2021Updated 5 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆74Mar 27, 2026Updated 7 months ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 8 years ago
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- Callable Loci... and more☆26Apr 8, 2026Updated 6 months ago
- run-length BWT tools for genomic sequences☆18May 19, 2022Updated 4 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at…☆17May 2, 2023Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Genetic Algorithm for Demographic Model Analysis☆59Feb 3, 2026Updated 8 months ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 6 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆170Sep 19, 2026Updated last month
- Shiny apps for teaching Population Genetics☆66Feb 4, 2023Updated 3 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- Explore ploidy levels from NGS data alone☆46Jan 19, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆24Jun 9, 2017Updated 9 years ago
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆39May 11, 2026Updated 5 months ago
- Alignment viewer for linux terminal☆132Sep 13, 2025Updated last year
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 8 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 3 months ago
- Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.☆13May 13, 2022Updated 4 years ago