RILAB / mopLinks
Simple tool for capturing alignment regions with sufficient quality for genotyping.
☆21Updated 4 years ago
Alternatives and similar repositories for mop
Users that are interested in mop are comparing it to the libraries listed below
Sorting:
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- GONE: Scripts, programs and an example data set☆47Updated 4 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- Infer demographic history with the Moran model☆50Updated 5 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- ☆53Updated 5 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated last month
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Presentations from the course☆38Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- Joint inference of heterozygosity rates and runs of homozygosity☆16Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 11 months ago
- Sex assignment through coverage☆20Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago