3BioCompBio / AbAgymLinks
☆15Updated last week
Alternatives and similar repositories for AbAgym
Users that are interested in AbAgym are comparing it to the libraries listed below
Sorting:
- ☆22Updated 11 months ago
- Code for humanization of antibody and nanobody☆58Updated 2 months ago
- Aligning protein generative models with experimental fitness☆108Updated last week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- ☆30Updated 3 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆45Updated 10 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆124Updated 4 months ago
- ☆94Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆33Updated 2 months ago
- ☆38Updated 4 months ago
- ☆65Updated 2 years ago
- ☆18Updated 5 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆50Updated 5 months ago
- workflow used to prepare PPB-Affinity database☆28Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆39Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 11 months ago
- ☆62Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆109Updated 2 months ago
- ☆76Updated 8 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆39Updated 4 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 3 weeks ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆114Updated 5 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year