☆23Nov 28, 2025Updated 6 months ago
Alternatives and similar repositories for AbAgym
Users that are interested in AbAgym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆46Aug 4, 2025Updated 10 months ago
- Protein-Protein Language Model with Novel Attention Mechanisms for Enhanced Inter-Protein Contact and Interaction Prediction☆58May 28, 2026Updated last week
- Prediction of Antibody CDR and protein loop flexibility☆17Sep 17, 2025Updated 8 months ago
- A cyclic peptide-protein complex dataset derived from AFDB.☆46Mar 17, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Extension of ThermoMPNN for double mutant predictions☆62Mar 23, 2026Updated 2 months ago
- Code for "Calibrating Generative Models" by Henry Smith, Nathaniel Diamant, and Brian Trippe☆40Apr 1, 2026Updated 2 months ago
- [ICML 2026] Official code release for paper "Temporal Score Rescaling for Temperature Sampling in Diffusion and Flow Models"☆46May 26, 2026Updated 2 weeks ago
- Code for AlphaFold Distillation for Protein Design☆28Sep 18, 2025Updated 8 months ago
- ☆100Oct 15, 2024Updated last year
- ☆19Apr 7, 2025Updated last year
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆76May 2, 2026Updated last month
- ☆42Jul 28, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆40Jun 4, 2025Updated last year
- Potts model-based protein sequence design☆104May 14, 2026Updated 3 weeks ago
- ☆26Apr 26, 2023Updated 3 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- ☆10Mar 10, 2023Updated 3 years ago
- ☆40Mar 30, 2025Updated last year
- Code to reproduce all the results in the paper: "Learning dynamics of linear denoising autoencoders." (ICML 2018)☆11Aug 20, 2018Updated 7 years ago
- ☆12Sep 21, 2023Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆58Jul 9, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆40Jun 26, 2024Updated last year
- CryoBoltz code for protein structure prediction with cryo-EM guidance. NeurIPS 2025.☆37Nov 30, 2025Updated 6 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated 2 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆11Jan 7, 2026Updated 5 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 10 months ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆44Mar 10, 2025Updated last year
- Codebase for SigmaDock: Untwisting Molecular Docking with SE(3) Fragmented Diffusion☆85Apr 7, 2026Updated 2 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆54Jul 22, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆108Apr 7, 2023Updated 3 years ago
- Diffusion-based all-atom protein generative model.☆236Aug 27, 2025Updated 9 months ago
- ☆40Sep 17, 2024Updated last year
- BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data☆14Jan 3, 2023Updated 3 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆33Mar 22, 2026Updated 2 months ago