Alternatives and similar repositories for amp-diffusion

Users that are interested in amp-diffusion are comparing it to the libraries listed below

• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆37Updated last year
• HannesStark / CodonMPNN
  ☆30Updated last year
• bzho3923 / CPDiffusion
  ☆25Updated last year
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆51Updated last week
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆40Updated last year
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆28Updated last year
• JoreyYan / Originflow
  ☆19Updated 2 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆40Updated 6 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• 3BioCompBio / AbAgym
  ☆16Updated 2 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 3 months ago
• ai4protein / VenusX
  ☆16Updated 4 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆56Updated last month
• LeiLiLab / EnzyGen
  ☆39Updated 7 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆85Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• luwei0917 / BindingGYM
  ☆40Updated 6 months ago
• Gonglab-THU / GeoStab
  ☆39Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆54Updated 7 months ago
• Vincentx15 / atomsurf
  ☆25Updated 2 months ago
• A4Bio / FoldToken_open
  ☆23Updated last year
• anirudhvenk / antibody-dpo
  ☆25Updated 8 months ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆34Updated 8 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• rdilip / kanzi
  ☆29Updated 2 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆52Updated last month
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆73Updated last week
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆53Updated 2 months ago