Calculate the RMSD between two antibody structure (including nanobody and antibody).
☆11May 19, 2023Updated 2 years ago
Alternatives and similar repositories for ab_rmsd
Users that are interested in ab_rmsd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Scoring methods for predicting the DDG upon protein mutation☆16Feb 20, 2023Updated 3 years ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆105Apr 7, 2023Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated last year
- python script that picks suitable targets for siRNA with off-target optimization☆16Oct 23, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Apr 10, 2025Updated last year
- EvolveX, a de novo antibody computational design pipeline.☆23Sep 18, 2025Updated 7 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- ☆17Apr 9, 2026Updated last month
- ☆10Feb 18, 2020Updated 6 years ago
- Target prediction☆14May 8, 2020Updated 6 years ago
- diffusion model for protein sequence generation☆50Feb 18, 2023Updated 3 years ago
- ☆43Apr 30, 2024Updated 2 years ago
- ☆11May 22, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Dec 2, 2025Updated 5 months ago
- A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Su…☆19Mar 1, 2026Updated 2 months ago
- Versatile human antibody sequence design☆22Apr 12, 2026Updated 3 weeks ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- ☆13Mar 28, 2025Updated last year
- Polyreactivity Website☆21Jun 26, 2023Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆78Nov 17, 2020Updated 5 years ago
- A visualization software for antibody multi sequence alignment☆22Jun 15, 2024Updated last year
- The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…☆21Jun 18, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆134Mar 10, 2026Updated last month
- Repo of AntiBMPNN project for antibody sequence design.☆42May 28, 2025Updated 11 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Feb 23, 2026Updated 2 months ago
- ☆15Dec 7, 2024Updated last year
- Synthetic Accessibility via Fragment Assembly Generation☆23Apr 18, 2026Updated 3 weeks ago
- ☆60Mar 25, 2024Updated 2 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Mar 19, 2025Updated last year
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆138Nov 30, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Sep 14, 2021Updated 4 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆42Jun 12, 2025Updated 10 months ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated 2 years ago
- MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins☆62Feb 28, 2026Updated 2 months ago
- Code for the antibody deep learning paper.☆16Feb 28, 2022Updated 4 years ago
- Visualize atom and non-atom attributions and SMILES strings☆50Apr 15, 2026Updated 3 weeks ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆359Jun 29, 2023Updated 2 years ago