DeepGraphLearning / esm-sLinks
Structure-Informed Protein Language Model
☆36Updated last year
Alternatives and similar repositories for esm-s
Users that are interested in esm-s are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- ☆72Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆51Updated 3 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆17Updated last month
- Baseline model for PPB-Affinity benchmark data☆34Updated 7 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆61Updated last month
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- ☆27Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆60Updated 7 months ago
- ☆32Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Updated 4 months ago
- Physical energy function for protein sequence design☆36Updated 2 years ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 2 months ago
- ☆46Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated 2 months ago
- One protein is all you need☆61Updated last month
- ☆33Updated last year
- ☆15Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆41Updated last year
- Protein stability prediction using rewired protein generative models☆56Updated 3 weeks ago
- ☆31Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆37Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Code for designing biased protein states☆35Updated 2 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆43Updated 9 months ago