DeepGraphLearning / esm-sLinks
Structure-Informed Protein Language Model
☆35Updated last year
Alternatives and similar repositories for esm-s
Users that are interested in esm-s are comparing it to the libraries listed below
Sorting:
- ☆38Updated 10 months ago
- Structure-conditioned masked language modeling for protein sequence design☆65Updated last year
- ☆19Updated 9 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆46Updated last week
- ☆70Updated 4 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆38Updated 4 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆38Updated 7 months ago
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆16Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 8 months ago
- ☆26Updated this week
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆45Updated 3 weeks ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆38Updated 5 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆53Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆82Updated last month
- Physical energy function for protein sequence design☆31Updated 2 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆35Updated last month
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆60Updated 5 months ago
- Structure prediction of alternative protein conformations☆76Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆63Updated 3 weeks ago
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- ☆60Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- ☆44Updated 10 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆68Updated 11 months ago