pengzhangzhi / Path-PlanningLinks
Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).
☆21Updated 4 months ago
Alternatives and similar repositories for Path-Planning
Users that are interested in Path-Planning are comparing it to the libraries listed below
Sorting:
- In-silico design pipeline for evaluating protein structure diffusion models.☆28Updated last year
- Code for the paper https://arxiv.org/abs/2402.04997☆102Updated last year
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆64Updated 8 months ago
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆24Updated 3 months ago
- Official implementation of "Learning the language of protein structures"☆41Updated 6 months ago
- ☆128Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 7 months ago
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆17Updated 2 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆73Updated 10 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Updated 2 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Updated 3 years ago
- ☆34Updated 8 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆103Updated last year
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆41Updated last month
- A conditionally adapted protein language model for the generation of enzymes☆23Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆53Updated 3 weeks ago
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆40Updated 6 months ago
- ☆34Updated 10 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated 3 weeks ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆78Updated last year
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆173Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- ☆12Updated last year
- ☆24Updated last year
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆49Updated 10 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago