Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"
☆22Oct 31, 2025Updated 4 months ago
Alternatives and similar repositories for oneprot
Users that are interested in oneprot are comparing it to the libraries listed below
Sorting:
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- Baseline model for PPB-Affinity benchmark data☆35May 21, 2025Updated 9 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆20Oct 3, 2024Updated last year
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆29Jan 28, 2026Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- workflow used to prepare PPB-Affinity database☆28Aug 22, 2024Updated last year
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆13Feb 24, 2025Updated last year
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆26May 19, 2024Updated last year
- ☆28Oct 15, 2024Updated last year
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆52Apr 20, 2025Updated 10 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last week
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Feb 29, 2024Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆44Aug 2, 2025Updated 7 months ago
- Deep reinforcement learning for protein complex modeling☆11May 28, 2022Updated 3 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Feb 12, 2026Updated 3 weeks ago
- Python package for AAIndex database (https://www.genome.jp/aaindex/)☆13Nov 16, 2023Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Jan 11, 2025Updated last year
- Learning the language of protein-protein interactions☆135Jan 12, 2026Updated last month
- ☆16Sep 15, 2025Updated 5 months ago
- SARS-CoV-2 RBD antibody escape calculator☆12Nov 19, 2024Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34May 2, 2024Updated last year
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆22Jul 18, 2025Updated 7 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆40Nov 4, 2025Updated 4 months ago
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- Official code release for Ambient Protein Diffusion☆32Aug 30, 2025Updated 6 months ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆41Nov 20, 2025Updated 3 months ago
- ☆22Mar 30, 2024Updated last year
- Clusters protein chains based on CA distance difference☆16Feb 4, 2025Updated last year
- Long disorder consensus predictor☆18Sep 2, 2025Updated 6 months ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- Trainable representation analysis study repository☆44Apr 5, 2022Updated 3 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Feb 6, 2023Updated 3 years ago
- The Complete Python Antibody Library☆24Jan 28, 2026Updated last month