Some notes (cookbook) for pyMol. Protein Crystallography course.
☆17Jun 19, 2021Updated 5 years ago
Alternatives and similar repositories for pyMol-cookbook
Users that are interested in pyMol-cookbook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 7 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆42Jun 19, 2026Updated 2 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- ☆16Dec 10, 2024Updated last year
- A collection of PyMOL plugins to visualize atomic bonds.☆22Sep 2, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Python library for NMR simulation☆29Aug 17, 2026Updated 2 weeks ago
- Blood–Brain Barrier Penetration Prediction Enhanced by Uncertainty Estimation☆13Feb 24, 2022Updated 4 years ago
- ☆20Jan 31, 2021Updated 5 years ago
- ☆14Jun 23, 2026Updated 2 months ago
- HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS☆32Aug 15, 2023Updated 3 years ago
- Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.☆43May 8, 2024Updated 2 years ago
- Clusters protein chains based on CA distance difference☆19Jul 22, 2026Updated last month
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆27Aug 13, 2026Updated 3 weeks ago
- Yasara Plugin for QM calculations☆15Jul 26, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- DFTB parameter optimization tools☆12Oct 5, 2023Updated 2 years ago
- The Molecular Modelling Toolkit☆55Apr 11, 2025Updated last year
- Pulls all geometry information from cccbdb.nist.gov for the specified chemical formula☆10Aug 6, 2017Updated 9 years ago
- A program analyzing 3D protein structures from PDB to generate 2D binding motifs☆17Jul 18, 2021Updated 5 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆36Dec 10, 2025Updated 8 months ago
- ☆31Jun 29, 2018Updated 8 years ago
- ☆22Jan 5, 2025Updated last year
- Google Colab notebooks for running molecular dynamics simulations with GROMACS☆49Oct 6, 2023Updated 2 years ago
- A simple library for handling NMR data in Julia☆15Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆134Jul 23, 2024Updated 2 years ago
- Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar stru…☆30May 15, 2026Updated 3 months ago
- ☆11Aug 11, 2016Updated 10 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 3 years ago
- PRIMoRDiA 1.0v source repository, executable built for Linux x86_64 machines and user guide☆16Oct 18, 2023Updated 2 years ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆89Sep 19, 2025Updated 11 months ago
- Developing a Deep learning classification-based model for screening pharmaceutical compounds with hERG inhibitory activity (cardiotoxicit…☆15Oct 2, 2024Updated last year
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- ☆66Feb 16, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tutorial for the Teach-Discover-Treat (TDT) Competition 2014 - Challenge 1: Anti-Malaria hit finding using classifier-fusion boosted pred…☆25Dec 21, 2017Updated 8 years ago
- ☆90Nov 18, 2025Updated 9 months ago
- Snippets for common computer-aided drug design tasks☆10Oct 17, 2017Updated 8 years ago
- Protocols for running MD simulations in Gromacs☆11Jun 18, 2024Updated 2 years ago
- Supporting Information for "Prediction of Organic Compound Aqueous Solubility Using Interpretable Machine Learning"☆13Jun 5, 2023Updated 3 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆11Aug 9, 2021Updated 5 years ago