Some notes (cookbook) for pyMol. Protein Crystallography course.
☆17Jun 19, 2021Updated 4 years ago
Alternatives and similar repositories for pyMol-cookbook
Users that are interested in pyMol-cookbook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 3 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- A collection of PyMOL plugins to visualize atomic bonds.☆22Sep 2, 2020Updated 5 years ago
- ☆16Dec 10, 2024Updated last year
- Blood–Brain Barrier Penetration Prediction Enhanced by Uncertainty Estimation☆12Feb 24, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Jan 31, 2021Updated 5 years ago
- HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS☆32Aug 15, 2023Updated 2 years ago
- Clusters protein chains based on CA distance difference☆16Mar 18, 2026Updated 3 weeks ago
- DFTB parameter optimization tools☆12Oct 5, 2023Updated 2 years ago
- Pulls all geometry information from cccbdb.nist.gov for the specified chemical formula☆10Aug 6, 2017Updated 8 years ago
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆35Dec 10, 2025Updated 4 months ago
- Yasara Plugin for QM calculations☆14May 9, 2024Updated last year
- ☆22Jan 5, 2025Updated last year
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆87Sep 19, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Aug 11, 2016Updated 9 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 2 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆128Jul 23, 2024Updated last year
- ☆66Feb 16, 2021Updated 5 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- A lightweight, single header OpenGL engine.☆15Sep 6, 2025Updated 7 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 5 months ago
- A program analyzing 3D protein structures from PDB to generate 2D binding motifs☆17Jul 18, 2021Updated 4 years ago
- Tutorial for the Teach-Discover-Treat (TDT) Competition 2014 - Challenge 1: Anti-Malaria hit finding using classifier-fusion boosted pred…☆24Dec 21, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- RSG Turkey Student Symposium 2020 - Workshop Session☆13Dec 17, 2020Updated 5 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Snippets for common computer-aided drug design tasks☆10Oct 17, 2017Updated 8 years ago
- Using neural networks for enhanced sampling in computational biophysics☆16Aug 17, 2017Updated 8 years ago
- Cython implementation of PDB -> DataFrame parsing☆34Dec 23, 2025Updated 3 months ago
- A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.☆56Sep 6, 2022Updated 3 years ago
- scripts to visualise results of alphafold2 and 3 multimer runs☆18May 28, 2024Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆50Nov 20, 2025Updated 4 months ago
- An experimental package for deep learning for molecular docking☆21Mar 21, 2020Updated 6 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆132Mar 10, 2026Updated last month
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Source codes for 'A baseline for reliable molecular prediction models via Bayesian learning'☆29Nov 16, 2020Updated 5 years ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆78May 5, 2023Updated 2 years ago