Reaction-Conditioned Virtual Screening of Enzymes
☆42Jun 11, 2025Updated 10 months ago
Alternatives and similar repositories for clipzyme
Users that are interested in clipzyme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆44Jun 17, 2025Updated 10 months ago
- Official repository of ReactZyme☆41Oct 12, 2024Updated last year
- A toolkit for enzyme discovery☆26Mar 3, 2026Updated 2 months ago
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆88Apr 21, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Jun 5, 2024Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆44Jun 28, 2021Updated 4 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆45Apr 11, 2024Updated 2 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- RXN for biochemical reactions☆76Oct 18, 2022Updated 3 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆308Apr 6, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- code and source data for de novo design of Kemp elimination paper☆25Sep 18, 2025Updated 7 months ago
- Optimized version of the Reaction Decoder Tool (RDTool)☆18Sep 17, 2020Updated 5 years ago
- Curated list on Deep Transformers Applications on Biology and Chemistry☆19Apr 8, 2023Updated 3 years ago
- ☆33Oct 27, 2025Updated 6 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 6 months ago
- ☆81Jun 29, 2025Updated 10 months ago
- An NLP-inspired chemical reaction fingerprint based on basic set arithmetic.☆81Jun 1, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆79Sep 12, 2024Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated last month
- Precise reaction atom-to-atom mapping with LocalMapper☆47Jan 27, 2026Updated 3 months ago
- ☆21Apr 10, 2026Updated 3 weeks ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆94Apr 9, 2026Updated 3 weeks ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆59Jan 28, 2026Updated 3 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆247Mar 26, 2026Updated last month
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆52Nov 4, 2025Updated 6 months ago
- ☆31Dec 12, 2024Updated last year
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year