Alternatives and similar repositories for protein-cluster-conformers

Users that are interested in protein-cluster-conformers are comparing it to the libraries listed below

• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆30Updated last week
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated last week
• Bitbol-Lab / rag-esm
  RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences
  ☆17Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• cl666666 / GVP-MSA
  ☆13Updated 2 years ago
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆13Updated last week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated last month
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• PickyBinders / PickyBinder
  Docking Tool Benchmarking Workflow
  ☆24Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆34Updated last month
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 4 months ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 10 months ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated 2 years ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆27Updated 6 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆15Updated 4 months ago
• Furman-Lab / PatchMAN
  ☆26Updated this week
• NRGlab / Surfaces
  ☆15Updated 5 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆38Updated 4 years ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 2 weeks ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 5 months ago