Clusters protein chains based on CA distance difference
☆18Jul 22, 2026Updated last week
Alternatives and similar repositories for protein-cluster-conformers
Users that are interested in protein-cluster-conformers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆15Jan 21, 2026Updated 6 months ago
- A high performance drop-in replacement for Biotite's PDBFile.☆43Jun 21, 2026Updated last month
- ☆16Dec 10, 2024Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Updated this week
- Cython implementation of PDB -> DataFrame parsing☆34May 23, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆41Sep 27, 2024Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jul 16, 2026Updated last week
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- ☆18Jun 13, 2025Updated last year
- ☆27Jul 3, 2024Updated 2 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 6 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆90Nov 18, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- ☆12May 3, 2025Updated last year
- ☆11Sep 2, 2024Updated last year
- ZDOCK predictions and PDB structures in C++ and Python☆15Jul 22, 2026Updated last week
- Binding pocket optimization based on force fields and docking scoring functions☆39Mar 19, 2025Updated last year
- ☆35Nov 22, 2023Updated 2 years ago
- Protein-peptide docking with ESMFold language model☆16May 30, 2026Updated last month
- Molstar Stories Webapp☆20May 19, 2026Updated 2 months ago
- PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein s…☆36Jul 16, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 2 months ago
- AlphaFind: Discover structure similarity across the entire known proteome☆27Apr 14, 2026Updated 3 months ago
- Explicit crosslinks in AlphaFold 3☆22Mar 17, 2025Updated last year
- A Light-Weight And Interpretable Molecular Docking Model☆26Oct 23, 2024Updated last year
- Energy minimization post-processing used in PoseBusters☆14Apr 4, 2025Updated last year
- Protein surface topographical mapping tool☆29Aug 17, 2023Updated 2 years ago
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 4 months ago
- Protein Structure Archiver☆15Sep 10, 2025Updated 10 months ago
- ☆13Apr 4, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated 2 years ago
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆64Mar 3, 2026Updated 4 months ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆55Apr 20, 2025Updated last year
- ☆13Feb 20, 2024Updated 2 years ago
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- Tutorial files☆12Aug 7, 2024Updated last year