Alternatives and similar repositories for protein-cluster-conformers

Users that are interested in protein-cluster-conformers are comparing it to the libraries listed below

• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆29Updated last year
• cl666666 / GVP-MSA
  ☆13Updated 2 years ago
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆13Updated this week
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆31Updated last month
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 2 months ago
• PKUliujl / GeoSeqBuilder
  ☆28Updated 7 months ago
• Furman-Lab / PatchMAN
  ☆26Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated last month
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆39Updated 4 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• oxpig / Humatch
  Fast, gene-specific joint humanisation of antibody heavy and light chains.
  ☆16Updated 9 months ago
• PickyBinders / PickyBinder
  Docking Tool Benchmarking Workflow
  ☆24Updated last year
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 6 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆16Updated 6 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated 2 years ago
• csi-greifflab / developability_profiling
  ☆25Updated 3 weeks ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 7 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆32Updated this week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• Sanofi-Public / LMR-SurfaceID
  Repo contains source code of the SurfaceID paper
  ☆24Updated last year
• NRGlab / Surfaces
  ☆15Updated 3 weeks ago
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 11 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 2 years ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago