Clusters protein chains based on CA distance difference
☆18Mar 18, 2026Updated 2 months ago
Alternatives and similar repositories for protein-cluster-conformers
Users that are interested in protein-cluster-conformers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jun 13, 2025Updated 11 months ago
- ☆16Dec 10, 2024Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Apr 16, 2026Updated last month
- Cython implementation of PDB -> DataFrame parsing☆34Dec 23, 2025Updated 5 months ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A high performance drop-in replacement for Biotite's PDBFile.☆42May 27, 2025Updated last year
- SE(3)-equivariant point cloud networks for virtual screening☆24Apr 29, 2023Updated 3 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- ☆27Jul 3, 2024Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jan 22, 2026Updated 4 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 4 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- ☆12May 3, 2025Updated last year
- ☆89Nov 18, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- ☆11Sep 2, 2024Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆38Mar 19, 2025Updated last year
- ZDOCK predictions and PDB structures in C++ and Python☆15Jan 1, 2024Updated 2 years ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 4 years ago
- BINANA (BINding ANAlyzer) analyzes the geometries of predicted ligand poses to identify molecular interactions that contribute to binding…☆25Jun 30, 2025Updated 10 months ago
- ☆35Nov 22, 2023Updated 2 years ago
- AlphaFind: Discover structure similarity across the entire known proteome☆26Apr 14, 2026Updated last month
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Energy minimization post-processing used in PoseBusters☆14Apr 4, 2025Updated last year
- ☆18Dec 31, 2024Updated last year
- Protein surface topographical mapping tool☆30Aug 17, 2023Updated 2 years ago
- 2D portraits of 3D protein structures☆27May 14, 2026Updated 2 weeks ago
- A Light-Weight And Interpretable Molecular Docking Model☆26Oct 23, 2024Updated last year
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 2 months ago
- ☆13Apr 4, 2025Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- A generic mechanism for describing views used in molecular visualizations☆66Mar 1, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- It's a package for evaluation of predicted poses, right?☆77Mar 27, 2026Updated 2 months ago
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆60Mar 3, 2026Updated 2 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆59Jan 28, 2026Updated 4 months ago
- Protein Structure Archiver☆15Sep 10, 2025Updated 8 months ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆54Apr 20, 2025Updated last year
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year