Pandaman-Ryan / AgentBindView external linksLinks
☆14Sep 1, 2024Updated last year
Alternatives and similar repositories for AgentBind
Users that are interested in AgentBind are comparing it to the libraries listed below
Sorting:
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 5 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆11Jun 16, 2025Updated 7 months ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- Search the biomedical literature for protein interactions and protein associations☆11Nov 24, 2023Updated 2 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 4 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- A short tutorial to using DL and keras for genomics with sequence data.☆15Dec 3, 2020Updated 5 years ago
- Gene Expression Decomposition and Integration☆19Updated this week
- TF MOtif Discovery from Importance SCOres☆165Dec 14, 2025Updated 2 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- ☆20Jul 16, 2024Updated last year
- Snakemake workflow for comparing E-G links to experimental data☆23Jan 22, 2026Updated 3 weeks ago
- Genomic interval machine learning☆21Jan 14, 2026Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated last year
- BWT construction and search☆126Jan 14, 2026Updated last month
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- ☆26Nov 7, 2023Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Valid and Powerful Machine-Learning-Assisted Genetic Association Studies☆23Jan 2, 2026Updated last month
- The repository contains all the code for the paper amino acid encoding using deep learning application☆20Jul 5, 2024Updated last year
- ☆19Mar 24, 2023Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated 10 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 2 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆30Mar 11, 2023Updated 2 years ago