☆21Aug 24, 2026Updated last month
Alternatives and similar repositories for varseek
Users that are interested in varseek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Sep 29, 2026Updated last week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 10 months ago
- ☆31Apr 13, 2026Updated 5 months ago
- ☆33Sep 21, 2026Updated 2 weeks ago
- ☆28Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Reusable tools for working with next-generation sequencing (NGS) data☆12Oct 7, 2024Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 7 months ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 7 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- ☆21May 24, 2025Updated last year
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆96Aug 21, 2026Updated last month
- ☆36Sep 7, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 10 months ago
- The Monod package fits CME models to sequencing data.☆37Apr 24, 2026Updated 5 months ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- Scoring GT/AG sites for improving spliced alignment☆59Nov 10, 2025Updated 10 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 5 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 2 months ago
- Workflow for somatic variant calling of long read data☆29Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A rust implementation of STAR☆80Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 11 months ago
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- Eukaryote Genome Annotation☆26Aug 21, 2026Updated last month
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated last year
- TD2☆43May 17, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆101Jan 28, 2026Updated 8 months ago
- Find and decompose genomic variation sites in pangenome graphs☆17Aug 17, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated 3 weeks ago
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆18Jul 13, 2026Updated 2 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Local alignment search with k-bounded matching statistics.☆24Sep 16, 2026Updated 3 weeks ago