pachterlab / voyagerpyLinks
☆13Updated 11 months ago
Alternatives and similar repositories for voyagerpy
Users that are interested in voyagerpy are comparing it to the libraries listed below
Sorting:
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Pipeline for designing custom probes against human genes☆16Updated 6 months ago
- ☆13Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 4 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆55Updated last week
- Information-based dimensionality reduction☆29Updated 5 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- CellRank 2's reproducibility repository.☆11Updated 9 months ago
- ☆18Updated last month
- Multi-resolution Variational Inference☆22Updated 2 months ago
- .h5mu files interface for Seurat☆30Updated last year
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- ☆44Updated this week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆29Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- ☆21Updated 2 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- ☆38Updated 8 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆21Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆25Updated 2 years ago