Alternatives and similar repositories for voyagerpy

Users that are interested in voyagerpy are comparing it to the libraries listed below

• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated 2 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated 2 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆20Updated last week
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated last week
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆53Updated 2 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆48Updated 8 months ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 3 weeks ago
• JCVenterInstitute / FRmatch
  Cell type matching in single-cell RNA-sequencing data using FR-Match
  ☆19Updated last week
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 4 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated 2 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 3 years ago
• OscarGVelasco / LotsOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated 4 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆19Updated 10 months ago
• fmicompbio / adv_singlecell_2022
  Material for the "Advanced topics in single-cell analysis" course (2022 edition)
  ☆17Updated 3 years ago
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated 2 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆36Updated 5 months ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 8 months ago
• lcmmichielsen / scHPL
  ☆37Updated 3 weeks ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 3 years ago
• vitkl / ParetoTI
  R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)
  ☆32Updated 5 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆27Updated 3 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated last year
• theislab / cross_system_integration
  ☆13Updated 5 months ago