pachterlab / voyagerpyLinks
☆13Updated last year
Alternatives and similar repositories for voyagerpy
Users that are interested in voyagerpy are comparing it to the libraries listed below
Sorting:
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated 2 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated this week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆23Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Information-based dimensionality reduction☆29Updated last year
- ☆44Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Pipeline for designing custom probes against human genes☆20Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- ☆44Updated last year
- ☆37Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆63Updated last week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- An R package for performing cell typing in SMI and other single cell data☆44Updated 6 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆23Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated last week
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago