minimal example implementations for bioinformatics workflow managers
☆283Oct 27, 2021Updated 4 years ago
Alternatives and similar repositories for bioinformatics-workflows
Users that are interested in bioinformatics-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆355Feb 26, 2026Updated last month
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆390Apr 4, 2026Updated last week
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆17Mar 30, 2026Updated last week
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆402Mar 30, 2026Updated last week
- Unix, R and python tools for genomics and data science☆1,375Aug 25, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,319Mar 30, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆295Updated this week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆170Feb 24, 2026Updated last month
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- Collection of bioinformatics training materials☆1,108Mar 29, 2026Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆194Jul 20, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A grammar of graphics for comparative genomics☆754Feb 23, 2026Updated last month
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆154Jan 23, 2026Updated 2 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,117Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆307Mar 6, 2023Updated 3 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- genes and genomes at your fingertips☆410Mar 5, 2026Updated last month
- exRNA Biomarker Discovery for Liquid Biopsy☆13Oct 29, 2020Updated 5 years ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- A curated list of awesome nanopore analysis tools.☆308Jul 2, 2025Updated 9 months ago
- Visualizing transcript structure and annotation using ggplot2☆167Aug 24, 2024Updated last year
- A structural variation pipeline for short-read sequencing☆202Updated this week
- Bioinformatics containers☆784Mar 30, 2026Updated last week
- Seurat meets tidyverse. The best of both worlds.☆164Mar 3, 2026Updated last month