minimal example implementations for bioinformatics workflow managers
☆282Oct 27, 2021Updated 4 years ago
Alternatives and similar repositories for bioinformatics-workflows
Users that are interested in bioinformatics-workflows are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆355Feb 26, 2026Updated 3 weeks ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆388Mar 10, 2026Updated last week
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆16Mar 9, 2026Updated 2 weeks ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆400Mar 9, 2026Updated 2 weeks ago
- Unix, R and python tools for genomics and data science☆1,374Aug 25, 2025Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,303Mar 16, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Mar 5, 2026Updated 2 weeks ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆169Feb 24, 2026Updated 3 weeks ago
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- Collection of bioinformatics training materials☆1,104Mar 15, 2026Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- A grammar of graphics for comparative genomics☆748Feb 23, 2026Updated last month
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆193Jul 20, 2022Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆153Jan 23, 2026Updated 2 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,108Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆306Mar 6, 2023Updated 3 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆870Mar 11, 2026Updated last week
- genes and genomes at your fingertips☆410Mar 5, 2026Updated 2 weeks ago
- exRNA Biomarker Discovery for Liquid Biopsy☆13Oct 29, 2020Updated 5 years ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- A curated list of awesome nanopore analysis tools.☆306Jul 2, 2025Updated 8 months ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Visualizing transcript structure and annotation using ggplot2☆166Aug 24, 2024Updated last year
- Bioinformatics containers☆779Feb 4, 2026Updated last month