GoekeLab / bioinformatics-workflowsLinks
minimal example implementations for bioinformatics workflow managers
☆280Updated 4 years ago
Alternatives and similar repositories for bioinformatics-workflows
Users that are interested in bioinformatics-workflows are comparing it to the libraries listed below
Sorting:
- Download FASTQ files from SRA or ENA repositories.☆363Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated this week
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- RNA-seq workflow using STAR and DESeq2☆351Updated 3 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- Nextflow training material☆209Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated this week
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆167Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated this week
- Short lessons from FAS Informatics coffee hour☆155Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆258Updated 3 months ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- This is the development home of the Snakemake wrapper repository, see☆238Updated this week
- Melbourne Bioinformatics documentation in markdown format☆120Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆185Updated this week
- Analyze your RNA sequencing data without writing a single line of code☆140Updated 7 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 6 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 6 months ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- BEDOPS: high-performance genomic feature operations☆357Updated 8 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Updated 2 years ago