maxplanck-ie / snakepipesLinks
Customizable workflows based on snakemake and python for the analysis of NGS data
☆395Updated this week
Alternatives and similar repositories for snakepipes
Users that are interested in snakepipes are comparing it to the libraries listed below
Sorting:
- RNA-seq workflow using STAR and DESeq2☆351Updated 3 weeks ago
- GTEx & TOPMed data production and analysis pipelines☆392Updated 4 months ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- genes and genomes at your fingertips☆405Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states