Alternatives and similar repositories for scidataflow

Users that are interested in scidataflow are comparing it to the libraries listed below

• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆204Updated 2 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated 2 weeks ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆142Updated last month
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated last week
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆167Updated 3 weeks ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆119Updated last month
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 5 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆173Updated last month
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆232Updated 2 weeks ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆108Updated last month
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆93Updated 2 months ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆190Updated 3 weeks ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated this week
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆134Updated last year
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆118Updated 3 weeks ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated last month
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆170Updated 6 months ago
• fayjustin / computational_biology
  course material
  ☆134Updated 2 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated 2 weeks ago
• davetang / learning_bam_file
  Learning the Sequence Alignment/Map format
  ☆113Updated 4 months ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆281Updated 4 years ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆46Updated last year
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆144Updated this week
• sharkLoc / rust-in-bioinformatics
  A collection of genomics software tools written in Rust
  ☆82Updated last week
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆154Updated 3 years ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆139Updated 6 months ago