Alternatives and similar repositories for scidataflow

Users that are interested in scidataflow are comparing it to the libraries listed below

• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆205Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆120Updated last week
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆67Updated 2 weeks ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆146Updated 3 months ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆101Updated 8 months ago
• fayjustin / computational_biology
  course material
  ☆135Updated 3 years ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆122Updated 3 weeks ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated last month
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆144Updated this week
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆83Updated 2 weeks ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆88Updated last week
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆167Updated 2 months ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆140Updated 8 months ago
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆156Updated 4 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆280Updated 4 years ago
• sib-swiss / glittr
  A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
  ☆45Updated 6 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆113Updated 3 months ago
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆170Updated last month
• sib-swiss / NGS-longreads-training
  ☆14Updated 3 weeks ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆93Updated 6 months ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆234Updated 2 months ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆176Updated this week
• sib-swiss / statistics-and-machine-learning-training
  ☆30Updated 4 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆271Updated last year
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆134Updated last year
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆155Updated 2 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated last week