Command line scientific data management tool
☆230Nov 4, 2024Updated last year
Alternatives and similar repositories for scidataflow
Users that are interested in scidataflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- An efficient CLI to extract sequences from the SRA☆127Jun 12, 2026Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆603Aug 13, 2024Updated 2 years ago
- Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆484Jul 26, 2026Updated last month
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 11 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- The D4 Quantitative Data Format☆175Nov 28, 2025Updated 9 months ago
- A high-performance BigWig and BigBed library in Rust☆120Aug 14, 2026Updated 2 weeks ago
- Biological sequence analysis for the modern age.☆309Updated this week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Genomic interval operations on Pandas DataFrames☆195Aug 3, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆50Jul 2, 2026Updated last month
- Bioinformatics I/O libraries in Rust☆720Aug 21, 2026Updated last week
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- Successor of bwa-mem for short-read alignment☆333Aug 13, 2026Updated 2 weeks ago
- Creating alignment plots from bam files☆132Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- long read RNA-seq quantification☆123Aug 19, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆70Updated this week
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆351Dec 12, 2025Updated 8 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆20Mar 7, 2024Updated 2 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated 2 weeks ago
- ☆14Dec 3, 2024Updated last year
- Fast genomics quality control tools for sequencing data, written in Rust.☆122Updated this week
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BWT construction and search☆130Updated this week
- genes and genomes at your fingertips☆411Jun 9, 2026Updated 2 months ago
- ☆21Feb 15, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated last year
- k-mers and the like☆23Updated this week
- Download FASTQ files from SRA or ENA repositories.☆404May 16, 2026Updated 3 months ago