Command line scientific data management tool
☆231Nov 4, 2024Updated last year
Alternatives and similar repositories for scidataflow
Users that are interested in scidataflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- An efficient CLI to extract sequences from the SRA☆123Mar 4, 2026Updated 2 weeks ago
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆111Feb 13, 2026Updated last month
- an API for intersections of genomic data☆147Mar 12, 2026Updated last week
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆663Mar 13, 2026Updated last week
- ☆46Nov 21, 2025Updated 4 months ago
- Genomic interval operations on Pandas DataFrames☆191Mar 2, 2026Updated 3 weeks ago
- expressions on VCFs☆91Updated this week
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Mar 7, 2024Updated 2 years ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Biological sequence analysis for the modern age.☆264Feb 22, 2026Updated last month
- long read RNA-seq quantification☆106Mar 16, 2026Updated last week
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 3 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- ☆13Dec 3, 2024Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 3 weeks ago
- BWT construction and search☆126Jan 14, 2026Updated 2 months ago
- Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆447Mar 16, 2026Updated last week
- genes and genomes at your fingertips☆410Mar 5, 2026Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆67Mar 2, 2026Updated 3 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 7 months ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Download FASTQ files from SRA or ENA repositories.☆376Feb 1, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- A pairwise sequence aligner written in Rust☆152Jan 27, 2026Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month