ewels / sra-explorerLinks
Web application to explore the Sequence Read Archive.
☆218Updated 3 months ago
Alternatives and similar repositories for sra-explorer
Users that are interested in sra-explorer are comparing it to the libraries listed below
Sorting:
- Generate IGV style locus tracks from bigWig files in R☆164Updated 8 months ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆254Updated 5 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆338Updated 3 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆244Updated 3 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆231Updated last week
- A collection of scripts and notes related to genomics and bioinformatics☆214Updated 3 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆324Updated last month
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆212Updated 2 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆273Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated last week
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆139Updated 10 years ago
- an R/shiny application for creation of Circos plot interactively☆157Updated 2 years ago
- Learning the Variant Call Format☆140Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month
- R package for DNA methylation analysis☆232Updated 4 months ago
- Tool for plotting sequencing data along genomic coordinates.☆296Updated 2 weeks ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆163Updated last month
- dN/dS methods to quantify selection in cancer and somatic evolution☆222Updated 2 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆177Updated last week
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆230Updated last week
- Match up paired end fastq files quickly and efficiently.☆150Updated last year