ewels / sra-explorer

Related projects ⓘ

Alternatives and complementary repositories for sra-explorer

• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆228Updated 3 weeks ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆243Updated last year
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆276Updated last month
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆257Updated last year
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆199Updated this week
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆187Updated last year
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆134Updated 4 years ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆200Updated 2 weeks ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆141Updated 3 weeks ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 3 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆212Updated last year
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆151Updated this week
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆259Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆188Updated last month
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆283Updated last year
• ENCODE-DCC / rna-seq-pipeline
  ☆141Updated 2 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆115Updated 2 years ago
• nextflow-io / training
  Nextflow training material
  ☆130Updated this week
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆104Updated last year
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆134Updated this week
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆127Updated 9 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆140Updated 2 months ago
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆154Updated last year
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆213Updated this week
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆273Updated 3 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆205Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆213Updated 3 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆283Updated 3 weeks ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆246Updated 4 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆192Updated 3 weeks ago