ewels / sra-explorer
Web application to explore the Sequence Read Archive.
☆201Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for sra-explorer
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆224Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆242Updated last year
- Detecting sites of genomic enrichment☆187Updated last year
- Download FASTQ files from SRA or ENA repositories.☆272Updated 2 weeks ago
- A short tutorial on how to use RSEM☆133Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆198Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆200Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆151Updated this week
- Application for making ENCODE Blacklists☆268Updated 3 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆257Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆153Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆138Updated 2 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Nextflow training material☆127Updated this week
- Check strandedness of RNA-Seq fastq files☆114Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated last year
- Full-Length Alternative Isoform analysis of RNA☆211Updated this week
- dN/dS methods to quantify selection in cancer and somatic evolution☆212Updated last year
- Generate IGV style locus tracks from bigWig files in R☆139Updated last week
- ATAC-seq peak-calling and QC analysis pipeline☆187Updated 3 weeks ago
- Read trimming tool for Illumina NGS data.☆127Updated 9 years ago
- ☆141Updated 2 years ago
- parallel fastq-dump wrapper☆283Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆195Updated 3 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆206Updated 5 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆226Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆211Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated last week
- ASCAT R package☆165Updated last week