Package for fetching metadata and downloading data from SRA/ENA/GEO
☆367Aug 16, 2026Updated 2 months ago
Alternatives and similar repositories for pysradb
Users that are interested in pysradb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to find sequencing data and metadata from public databases.☆605Aug 13, 2024Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆408Oct 7, 2026Updated 3 weeks ago
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 4 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆906Oct 3, 2026Updated 3 weeks ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Aug 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- parallel fastq-dump wrapper☆311Apr 26, 2023Updated 3 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆332Oct 10, 2026Updated 2 weeks ago
- Performant Pythonic GenomicRanges☆492Updated this week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆296Jun 10, 2026Updated 4 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆558Updated this week
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆394Updated this week
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆318Sep 2, 2026Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆483Oct 21, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,452Oct 7, 2026Updated 3 weeks ago
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 11 months ago
- A grammar of graphics for comparative genomics☆792Oct 5, 2026Updated 3 weeks ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆201Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- A list of interesting genome browser and genome visualization programs☆1,112Updated this week
- 🧬 gget enables efficient querying of genomic reference databases☆1,208Oct 22, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- k-mers and the like☆22Oct 18, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Web application to explore the Sequence Read Archive.☆225Jul 17, 2025Updated last year
- Read alignment statistics for metagenomics☆411Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆404Oct 21, 2026Updated last week
- GFF and GTF file manipulation and interconversion☆321Oct 21, 2026Updated last week
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆270Oct 14, 2026Updated 2 weeks ago
- Jupyter notebook based genomic data visualization toolkit.☆260Sep 22, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 7 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆258Oct 15, 2026Updated 2 weeks ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,606Oct 22, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆604Jul 5, 2026Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- Gene cluster comparison figure generator☆660Updated this week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Updated this week
- SRA Tools☆1,372Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆562Aug 1, 2023Updated 3 years ago