Package for fetching metadata and downloading data from SRA/ENA/GEO
☆360Dec 9, 2025Updated 5 months ago
Alternatives and similar repositories for pysradb
Users that are interested in pysradb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- Download FASTQ files from SRA or ENA repositories.☆389May 16, 2026Updated 2 weeks ago
- genes and genomes at your fingertips☆412Mar 5, 2026Updated 2 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆110Aug 18, 2025Updated 9 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆886Jul 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- parallel fastq-dump wrapper☆306Apr 26, 2023Updated 3 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542May 21, 2026Updated last week
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated last month
- k-mers and the like☆22Updated this week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆295Jan 16, 2026Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆192Apr 30, 2026Updated 3 weeks ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆391Apr 4, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A list of interesting genome browser and genome visualization programs☆1,080May 15, 2026Updated 2 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆470Mar 20, 2026Updated 2 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆306Apr 10, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,366Apr 24, 2026Updated last month
- Jupyter notebook based genomic data visualization toolkit.☆257Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,451May 20, 2026Updated last week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Oct 2, 2025Updated 7 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆187Mar 17, 2026Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Customizable workflows based on snakemake and python for the analysis of NGS data☆405May 18, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,555May 22, 2026Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆252May 13, 2026Updated 2 weeks ago
- A grammar of graphics for comparative genomics☆762Feb 23, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated 2 weeks ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆588Jan 13, 2026Updated 4 months ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 6 months ago
- The next version of bwa-mem☆834Oct 15, 2025Updated 7 months ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated last month
- SRA Tools☆1,340May 21, 2026Updated last week
- Reference genome resource manager☆74Mar 6, 2026Updated 2 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆128Apr 10, 2026Updated last month
- Scripts to download genomes from the NCBI FTP servers☆1,077Apr 7, 2026Updated last month